Protein–RNA interactions for Protein: Q9NUG4

CCM2L, Cerebral cavernous malformations 2 protein-like, humanhuman

Predicted RBP Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2LQ9NUG4 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCM2LQ9NUG4 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCM2LQ9NUG4 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCM2LQ9NUG4 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCM2LQ9NUG4 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 DFFBP1-201ENST00000433250 979 ntBASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 AC004066.1-201ENST00000502488 802 ntBASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 AC125603.3-201ENST00000550742 486 ntTSL 3 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 RN7SL828P-201ENST00000607615 303 ntBASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
CCM2LQ9NUG4 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 AL391825.1-201ENST00000457671 1364 ntBASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 AL137783.1-201ENST00000623494 1896 ntBASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 RPL37AP1-201ENST00000412502 279 ntBASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 AC022210.1-201ENST00000449856 793 ntBASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 AC106886.1-201ENST00000568660 600 ntBASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 AC025048.3-201ENST00000590609 569 ntBASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 AC008494.3-201ENST00000606615 944 ntBASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 AC005702.4-201ENST00000618393 416 ntBASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 MIR6069-201ENST00000620069 79 ntBASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CCM2LQ9NUG4 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms