Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 MRPL37P1-201ENST00000592451 1337 ntBASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AC092658.1-201ENST00000505836 891 ntBASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 RNF41-210ENST00000552244 716 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 RN7SL219P-201ENST00000582872 296 ntBASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 AC091271.1-201ENST00000611877 1162 ntBASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC14.67□□□□□ -0.06
TRIM39Q9HCM9 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 SHC1P1-201ENST00000425230 1745 ntBASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 AL136172.1-201ENST00000598590 1394 ntBASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 AC010141.1-201ENST00000411585 623 ntBASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 PUDPP3-201ENST00000445368 636 ntBASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 HSPB1P2-201ENST00000448722 546 ntBASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
TRIM39Q9HCM9 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms