Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 AC092933.1-201ENST00000393644 945 ntBASIC15.25■□□□□ 0.03
PCDH9Q9HC56 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 GNRHR2-203ENST00000581100 1187 ntBASIC15.25■□□□□ 0.03
PCDH9Q9HC56 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.25■□□□□ 0.03
PCDH9Q9HC56 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 AC015688.4-201ENST00000580780 1647 ntBASIC15.25■□□□□ 0.03
PCDH9Q9HC56 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PCDH9Q9HC56 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 MXI1-205ENST00000393134 889 ntTSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 VPS18-202ENST00000558474 873 ntTSL 3 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
PCDH9Q9HC56 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
PCDH9Q9HC56 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms