Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
ABCA3Q99758 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 OLA1P2-201ENST00000395519 1264 ntBASIC18.8■□□□□ 0.6
ABCA3Q99758 PHBP10-201ENST00000416467 784 ntBASIC18.8■□□□□ 0.6
ABCA3Q99758 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC18.8■□□□□ 0.6
ABCA3Q99758 AP000640.1-201ENST00000525337 879 ntTSL 2 BASIC18.8■□□□□ 0.6
ABCA3Q99758 BAK1P2-201ENST00000532665 631 ntBASIC18.8■□□□□ 0.6
ABCA3Q99758 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC18.8■□□□□ 0.6
ABCA3Q99758 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC18.8■□□□□ 0.6
ABCA3Q99758 RN7SL524P-201ENST00000581152 300 ntBASIC18.8■□□□□ 0.6
ABCA3Q99758 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 AC006986.1-201ENST00000612764 241 ntBASIC18.8■□□□□ 0.6
ABCA3Q99758 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
ABCA3Q99758 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
ABCA3Q99758 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
ABCA3Q99758 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
ABCA3Q99758 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
ABCA3Q99758 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
ABCA3Q99758 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.8■□□□□ 0.6
ABCA3Q99758 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
ABCA3Q99758 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
ABCA3Q99758 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 AL137244.1-201ENST00000422931 865 ntBASIC18.8■□□□□ 0.6
ABCA3Q99758 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC18.8■□□□□ 0.6
ABCA3Q99758 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC18.8■□□□□ 0.6
ABCA3Q99758 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC18.8■□□□□ 0.6
ABCA3Q99758 RNU1-80P-201ENST00000459500 161 ntBASIC18.8■□□□□ 0.6
ABCA3Q99758 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC18.8■□□□□ 0.6
ABCA3Q99758 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ABCA3Q99758 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC18.8■□□□□ 0.6
ABCA3Q99758 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC18.8■□□□□ 0.6
ABCA3Q99758 PRR20FP-201ENST00000603320 180 ntBASIC18.8■□□□□ 0.6
ABCA3Q99758 AL353622.2-201ENST00000605846 425 ntBASIC18.8■□□□□ 0.6
ABCA3Q99758 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC18.8■□□□□ 0.6
ABCA3Q99758 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
ABCA3Q99758 AC068760.1-201ENST00000493579 1953 ntBASIC18.8■□□□□ 0.6
ABCA3Q99758 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA3Q99758 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA3Q99758 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA3Q99758 AL139158.3-201ENST00000641212 1562 ntBASIC18.79■□□□□ 0.6
ABCA3Q99758 AC138035.3-201ENST00000622706 2791 ntBASIC18.79■□□□□ 0.6
ABCA3Q99758 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
ABCA3Q99758 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA3Q99758 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC18.79■□□□□ 0.6
ABCA3Q99758 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA3Q99758 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.79■□□□□ 0.6
ABCA3Q99758 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA3Q99758 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA3Q99758 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.79■□□□□ 0.6
ABCA3Q99758 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
ABCA3Q99758 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC18.79■□□□□ 0.6
ABCA3Q99758 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC18.79■□□□□ 0.6
ABCA3Q99758 TTTY18-201ENST00000438677 221 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA3Q99758 AC099328.1-201ENST00000498809 1030 ntBASIC18.79■□□□□ 0.6
ABCA3Q99758 AC147876.1-201ENST00000504408 322 ntBASIC18.79■□□□□ 0.6
ABCA3Q99758 COQ10BP2-201ENST00000513804 724 ntBASIC18.79■□□□□ 0.6
ABCA3Q99758 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC18.79■□□□□ 0.6
ABCA3Q99758 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC18.79■□□□□ 0.6
ABCA3Q99758 NKAPP1-204ENST00000555168 557 ntTSL 4 BASIC18.79■□□□□ 0.6
ABCA3Q99758 AC026120.2-201ENST00000617239 309 ntBASIC18.79■□□□□ 0.6
ABCA3Q99758 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA3Q99758 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC18.79■□□□□ 0.6
ABCA3Q99758 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
ABCA3Q99758 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC18.79■□□□□ 0.6
ABCA3Q99758 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA3Q99758 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA3Q99758 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ABCA3Q99758 LILRP2-202ENST00000413572 1383 ntBASIC18.79■□□□□ 0.6
ABCA3Q99758 SALL4P6-201ENST00000429385 1691 ntBASIC18.79■□□□□ 0.6
ABCA3Q99758 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
ABCA3Q99758 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC18.78■□□□□ 0.6
ABCA3Q99758 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA3Q99758 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA3Q99758 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA3Q99758 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA3Q99758 RPL10-203ENST00000406022 748 ntTSL 3 BASIC18.78■□□□□ 0.6
ABCA3Q99758 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC18.78■□□□□ 0.6
ABCA3Q99758 KHDRBS3-206ENST00000520981 1243 ntTSL 5 BASIC18.78■□□□□ 0.6
ABCA3Q99758 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC18.78■□□□□ 0.6
ABCA3Q99758 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC18.78■□□□□ 0.6
ABCA3Q99758 RN7SL121P-201ENST00000584223 273 ntBASIC18.78■□□□□ 0.6
ABCA3Q99758 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA3Q99758 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.78■□□□□ 0.6
ABCA3Q99758 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA3Q99758 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA3Q99758 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA3Q99758 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC18.78■□□□□ 0.6
ABCA3Q99758 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ABCA3Q99758 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms