Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
USP28Q96RU2 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP28Q96RU2 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
USP28Q96RU2 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP28Q96RU2 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
USP28Q96RU2 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
USP28Q96RU2 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
USP28Q96RU2 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP28Q96RU2 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC16.84■□□□□ 0.29
USP28Q96RU2 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP28Q96RU2 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP28Q96RU2 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC16.84■□□□□ 0.29
USP28Q96RU2 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP28Q96RU2 AL590640.2-201ENST00000457038 527 ntBASIC16.84■□□□□ 0.29
USP28Q96RU2 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.84■□□□□ 0.29
USP28Q96RU2 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.84■□□□□ 0.29
USP28Q96RU2 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC16.84■□□□□ 0.29
USP28Q96RU2 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.84■□□□□ 0.29
USP28Q96RU2 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.84■□□□□ 0.29
USP28Q96RU2 AC025279.2-201ENST00000569730 653 ntBASIC16.84■□□□□ 0.29
USP28Q96RU2 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.84■□□□□ 0.29
USP28Q96RU2 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP28Q96RU2 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
USP28Q96RU2 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
USP28Q96RU2 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.84■□□□□ 0.29
USP28Q96RU2 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
USP28Q96RU2 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
USP28Q96RU2 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
USP28Q96RU2 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.84■□□□□ 0.29
USP28Q96RU2 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
USP28Q96RU2 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC16.84■□□□□ 0.29
USP28Q96RU2 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC16.84■□□□□ 0.29
USP28Q96RU2 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
USP28Q96RU2 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC16.84■□□□□ 0.29
USP28Q96RU2 LSS-211ENST00000522411 2523 ntTSL 2 BASIC16.84■□□□□ 0.29
USP28Q96RU2 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
USP28Q96RU2 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
USP28Q96RU2 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
USP28Q96RU2 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC16.83■□□□□ 0.28
USP28Q96RU2 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.83■□□□□ 0.28
USP28Q96RU2 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
USP28Q96RU2 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.83■□□□□ 0.28
USP28Q96RU2 RPL28-204ENST00000431533 590 ntTSL 2 BASIC16.83■□□□□ 0.28
USP28Q96RU2 RN7SL837P-201ENST00000463010 287 ntBASIC16.83■□□□□ 0.28
USP28Q96RU2 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC16.83■□□□□ 0.28
USP28Q96RU2 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
USP28Q96RU2 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.83■□□□□ 0.28
USP28Q96RU2 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
USP28Q96RU2 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.83■□□□□ 0.28
USP28Q96RU2 AL355385.1-201ENST00000606123 409 ntBASIC16.83■□□□□ 0.28
USP28Q96RU2 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
USP28Q96RU2 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC16.83■□□□□ 0.28
USP28Q96RU2 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
USP28Q96RU2 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
USP28Q96RU2 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 AC023794.5-201ENST00000564380 2157 ntBASIC16.82■□□□□ 0.28
USP28Q96RU2 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC16.82■□□□□ 0.28
USP28Q96RU2 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC16.82■□□□□ 0.28
USP28Q96RU2 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
USP28Q96RU2 KRT8P28-201ENST00000433288 1390 ntBASIC16.82■□□□□ 0.28
USP28Q96RU2 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC16.82■□□□□ 0.28
USP28Q96RU2 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.82■□□□□ 0.28
USP28Q96RU2 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.82■□□□□ 0.28
USP28Q96RU2 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
USP28Q96RU2 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.82■□□□□ 0.28
USP28Q96RU2 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
USP28Q96RU2 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms