Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 KRT17P3-201ENST00000420566 1262 ntBASIC9.1□□□□□ -0.95
LINC00643Q86TS7 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 AC006015.1-201ENST00000429970 570 ntBASIC9.1□□□□□ -0.95
LINC00643Q86TS7 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 AC133681.1-201ENST00000465482 601 ntBASIC9.1□□□□□ -0.95
LINC00643Q86TS7 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 GPR32P1-201ENST00000601788 811 ntBASIC9.1□□□□□ -0.95
LINC00643Q86TS7 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 MIR6074-201ENST00000612054 107 ntBASIC9.1□□□□□ -0.95
LINC00643Q86TS7 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 PRAME-201ENST00000398741 2202 ntAPPRIS P2 TSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 AC020912.1-201ENST00000638312 5059 ntTSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 SLC5A11-202ENST00000424767 2399 ntTSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 DBIL5P-203ENST00000536214 2677 ntBASIC9.1□□□□□ -0.95
LINC00643Q86TS7 ZNF571-AS1-203ENST00000586139 2684 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 MID1IP1-204ENST00000614558 3781 ntAPPRIS P1 TSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 AMPD2-203ENST00000358729 2838 ntTSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 TMBIM6-227ENST00000552699 2964 ntAPPRIS ALT2 TSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 PNPLA6-203ENST00000450331 4457 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 ZNF706-209ENST00000520347 3502 ntAPPRIS P1 TSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 LILRP1-201ENST00000444199 1370 ntBASIC9.1□□□□□ -0.95
LINC00643Q86TS7 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 MESD-201ENST00000261758 4264 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 CADM3-AS1-201ENST00000415675 5044 ntTSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 TPO-204ENST00000382198 2283 ntTSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 DOCK3-201ENST00000266037 8755 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 MINK1-203ENST00000453408 3939 ntAPPRIS ALT2 TSL 1 (best) BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 STXBP1-221ENST00000637953 3925 ntTSL 5 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 ORAI2-210ENST00000611770 10679 ntAPPRIS P1 TSL 2 BASIC9.1□□□□□ -0.95
LINC00643Q86TS7 MBNL1-AS1-202ENST00000608395 6585 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 MED16-204ENST00000395808 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 P4HA1-201ENST00000263556 2844 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 CAGE1-201ENST00000296742 2821 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 P4HA1-204ENST00000394890 2844 ntAPPRIS ALT1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 ABCC4-206ENST00000536256 2840 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 TNS1-220ENST00000611415 6509 ntAPPRIS ALT2 TSL 5 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 USP2-AS1-202ENST00000500970 1784 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 ACSS3-203ENST00000548058 9254 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 DDR1-238ENST00000446312 3202 ntTSL 5 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 LINC01679-201ENST00000442815 2798 ntTSL 3 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 NEK11-209ENST00000510688 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 OS9-203ENST00000389142 2457 ntTSL 5 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 NAB1-203ENST00000409641 2472 ntAPPRIS ALT1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 PRRG4-201ENST00000257836 5530 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 MICAL2-201ENST00000256194 3906 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 AKR1C8P-201ENST00000578467 2182 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 GRIK5-202ENST00000301218 3310 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 ATP6V1B1-201ENST00000234396 1891 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 FAM105A-201ENST00000274217 3597 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 RGS16-201ENST00000367558 2427 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 SERF2-207ENST00000409614 582 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 PAWRP1-201ENST00000451083 565 ntBASIC9.09□□□□□ -0.95
LINC00643Q86TS7 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 RPS20-210ENST00000523936 899 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 NFATC2IP-206ENST00000568148 1157 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 AC005412.3-201ENST00000580309 715 ntBASIC9.09□□□□□ -0.95
LINC00643Q86TS7 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 AC021097.1-201ENST00000607902 574 ntBASIC9.09□□□□□ -0.95
LINC00643Q86TS7 BSG-214ENST00000614867 960 ntTSL 3 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 SLC8A3-207ENST00000528359 2840 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 SLC8A3-210ENST00000534137 2837 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 AL391294.1-201ENST00000641352 4068 ntBASIC9.09□□□□□ -0.95
LINC00643Q86TS7 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 RNF213-201ENST00000319921 5316 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 GTF2IP13-202ENST00000609439 10247 ntTSL 5 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 ZSCAN20-202ENST00000373413 2367 ntTSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 BORA-202ENST00000377815 1673 ntAPPRIS ALT2 TSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 AC009549.1-201ENST00000603468 1686 ntBASIC9.09□□□□□ -0.95
LINC00643Q86TS7 PLEKHG5-202ENST00000377725 3475 ntAPPRIS ALT2 TSL 1 (best) BASIC9.09□□□□□ -0.95
LINC00643Q86TS7 TMEM18-201ENST00000281017 2762 ntAPPRIS P2 TSL 1 (best) BASIC9.09□□□□□ -0.95
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms