Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 AL590440.2-201ENST00000641973 1595 ntBASIC17.63■□□□□ 0.41
RNF20Q5VTR2 LINC01230-201ENST00000625222 3017 ntBASIC17.63■□□□□ 0.41
RNF20Q5VTR2 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 AC078819.1-201ENST00000547454 765 ntBASIC17.63■□□□□ 0.41
RNF20Q5VTR2 AC012085.1-201ENST00000548270 765 ntBASIC17.63■□□□□ 0.41
RNF20Q5VTR2 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 AC002472.3-201ENST00000640124 621 ntBASIC17.63■□□□□ 0.41
RNF20Q5VTR2 OS9-204ENST00000389146 2091 ntTSL 2 BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 RN7SL832P-201ENST00000607781 1756 ntBASIC17.63■□□□□ 0.41
RNF20Q5VTR2 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 AC215219.1-201ENST00000400706 1817 ntBASIC17.63■□□□□ 0.41
RNF20Q5VTR2 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RNF20Q5VTR2 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 AC117489.1-201ENST00000625169 3217 ntBASIC17.62■□□□□ 0.41
RNF20Q5VTR2 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 ARSEP1-201ENST00000420443 635 ntBASIC17.62■□□□□ 0.41
RNF20Q5VTR2 COX20P2-201ENST00000452636 358 ntBASIC17.62■□□□□ 0.41
RNF20Q5VTR2 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 RN7SL713P-201ENST00000582127 302 ntBASIC17.62■□□□□ 0.41
RNF20Q5VTR2 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 WARS-203ENST00000358655 2466 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
RNF20Q5VTR2 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 ST20-AS1-201ENST00000560255 4223 ntBASIC17.61■□□□□ 0.41
RNF20Q5VTR2 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 AC006001.1-201ENST00000325130 474 ntBASIC17.61■□□□□ 0.41
RNF20Q5VTR2 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 COX5BP1-201ENST00000507622 393 ntBASIC17.61■□□□□ 0.41
RNF20Q5VTR2 AP003171.2-201ENST00000528208 925 ntBASIC17.61■□□□□ 0.41
RNF20Q5VTR2 AC005225.4-201ENST00000557330 545 ntBASIC17.61■□□□□ 0.41
RNF20Q5VTR2 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.61■□□□□ 0.41
RNF20Q5VTR2 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms