Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL28A1Q2UY09 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 AC097376.2-205ENST00000610159 5334 ntBASIC14.23□□□□□ -0.13
COL28A1Q2UY09 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 HNRNPA1P41-201ENST00000397777 928 ntBASIC14.23□□□□□ -0.13
COL28A1Q2UY09 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 AC073150.1-201ENST00000450406 1084 ntBASIC14.23□□□□□ -0.13
COL28A1Q2UY09 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 MIR4754-201ENST00000582477 89 ntBASIC14.23□□□□□ -0.13
COL28A1Q2UY09 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 PLS3-210ENST00000626746 216 ntTSL 4 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 OR2I1P-210ENST00000642037 4691 ntBASIC14.23□□□□□ -0.13
COL28A1Q2UY09 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.23□□□□□ -0.13
COL28A1Q2UY09 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 AC148477.4-201ENST00000613430 1793 ntBASIC14.22□□□□□ -0.13
COL28A1Q2UY09 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL28A1Q2UY09 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms