Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA1P55317 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA1P55317 FAM207CP-201ENST00000443486 507 ntBASIC14.28□□□□□ -0.12
FOXA1P55317 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
FOXA1P55317 FKBP4P6-201ENST00000457486 1332 ntBASIC14.28□□□□□ -0.12
FOXA1P55317 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
FOXA1P55317 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXA1P55317 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXA1P55317 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.28□□□□□ -0.12
FOXA1P55317 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA1P55317 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.28□□□□□ -0.12
FOXA1P55317 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXA1P55317 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA1P55317 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
FOXA1P55317 AL138709.1-201ENST00000614840 1693 ntBASIC14.28□□□□□ -0.12
FOXA1P55317 TBC1D3-201ENST00000620215 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 TBC1D3C-201ENST00000622206 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 AL157996.1-201ENST00000624684 2299 ntBASIC14.28□□□□□ -0.12
FOXA1P55317 AL033527.5-201ENST00000641382 801 ntBASIC14.28□□□□□ -0.12
FOXA1P55317 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
FOXA1P55317 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
FOXA1P55317 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
FOXA1P55317 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC14.28□□□□□ -0.12
FOXA1P55317 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
FOXA1P55317 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC14.28□□□□□ -0.12
FOXA1P55317 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.27□□□□□ -0.12
FOXA1P55317 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
FOXA1P55317 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
FOXA1P55317 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.27□□□□□ -0.12
FOXA1P55317 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
FOXA1P55317 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
FOXA1P55317 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.27□□□□□ -0.12
FOXA1P55317 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC14.27□□□□□ -0.13
FOXA1P55317 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
FOXA1P55317 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
FOXA1P55317 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
FOXA1P55317 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.27□□□□□ -0.13
FOXA1P55317 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.27□□□□□ -0.13
FOXA1P55317 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.27□□□□□ -0.13
FOXA1P55317 AC002472.2-201ENST00000442739 958 ntBASIC14.27□□□□□ -0.13
FOXA1P55317 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 AC009486.1-201ENST00000569860 813 ntBASIC14.27□□□□□ -0.13
FOXA1P55317 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.27□□□□□ -0.13
FOXA1P55317 ENPP7P14-201ENST00000621765 1040 ntBASIC14.27□□□□□ -0.13
FOXA1P55317 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
FOXA1P55317 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
FOXA1P55317 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
FOXA1P55317 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
FOXA1P55317 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC14.27□□□□□ -0.13
FOXA1P55317 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
FOXA1P55317 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.26□□□□□ -0.13
FOXA1P55317 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 AGAP10P-201ENST00000454844 2418 ntBASIC14.26□□□□□ -0.13
FOXA1P55317 FAM90A12P-201ENST00000519497 2375 ntBASIC14.26□□□□□ -0.13
FOXA1P55317 FAM90A24P-201ENST00000520792 2369 ntBASIC14.26□□□□□ -0.13
FOXA1P55317 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
FOXA1P55317 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
FOXA1P55317 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 AC134312.5-201ENST00000568031 1313 ntBASIC14.26□□□□□ -0.13
FOXA1P55317 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
FOXA1P55317 BCRP1-201ENST00000444246 691 ntBASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms