Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.6□□□□□ -0.23
CDH11P55287 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC13.6□□□□□ -0.23
CDH11P55287 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.6□□□□□ -0.23
CDH11P55287 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
CDH11P55287 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC13.6□□□□□ -0.23
CDH11P55287 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CDH11P55287 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
CDH11P55287 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
CDH11P55287 ARSEP1-201ENST00000420443 635 ntBASIC13.6□□□□□ -0.23
CDH11P55287 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.6□□□□□ -0.23
CDH11P55287 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC13.6□□□□□ -0.23
CDH11P55287 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC13.6□□□□□ -0.23
CDH11P55287 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.6□□□□□ -0.23
CDH11P55287 RN7SL399P-201ENST00000471648 279 ntBASIC13.6□□□□□ -0.23
CDH11P55287 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC13.6□□□□□ -0.23
CDH11P55287 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CDH11P55287 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.6□□□□□ -0.23
CDH11P55287 NOP2-220ENST00000545915 630 ntTSL 2 BASIC13.6□□□□□ -0.23
CDH11P55287 AC092552.1-201ENST00000547243 906 ntBASIC13.6□□□□□ -0.23
CDH11P55287 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 AC000095.1-201ENST00000603208 874 ntBASIC13.6□□□□□ -0.23
CDH11P55287 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.6□□□□□ -0.23
CDH11P55287 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 AL033527.5-201ENST00000641382 801 ntBASIC13.6□□□□□ -0.23
CDH11P55287 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.6□□□□□ -0.23
CDH11P55287 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CDH11P55287 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
CDH11P55287 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 AGGF1P1-201ENST00000509500 2073 ntBASIC13.6□□□□□ -0.23
CDH11P55287 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC13.6□□□□□ -0.23
CDH11P55287 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CDH11P55287 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.59□□□□□ -0.23
CDH11P55287 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
CDH11P55287 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
CDH11P55287 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.59□□□□□ -0.23
CDH11P55287 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 PEG13-201ENST00000631594 5667 ntBASIC13.59□□□□□ -0.23
CDH11P55287 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
CDH11P55287 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
CDH11P55287 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC13.59□□□□□ -0.23
CDH11P55287 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 AC007389.4-201ENST00000454674 793 ntBASIC13.59□□□□□ -0.23
CDH11P55287 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.59□□□□□ -0.23
CDH11P55287 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.59□□□□□ -0.23
CDH11P55287 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC13.59□□□□□ -0.23
CDH11P55287 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC13.59□□□□□ -0.23
CDH11P55287 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.59□□□□□ -0.23
CDH11P55287 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC13.59□□□□□ -0.23
CDH11P55287 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
CDH11P55287 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CDH11P55287 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms