Protein–RNA interactions for Protein: P0CG48

UBC, Polyubiquitin-C, humanhuman

Known RBP Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBCP0CG48 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 TCAM1P-207ENST00000485295 1537 ntBASIC13.02□□□□□ -0.33
UBCP0CG48 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.02□□□□□ -0.33
UBCP0CG48 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC13.02□□□□□ -0.33
UBCP0CG48 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.02□□□□□ -0.33
UBCP0CG48 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
UBCP0CG48 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC13.02□□□□□ -0.33
UBCP0CG48 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
UBCP0CG48 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
UBCP0CG48 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
UBCP0CG48 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 MYADML-201ENST00000474610 2147 ntBASIC13.01□□□□□ -0.33
UBCP0CG48 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC13.01□□□□□ -0.33
UBCP0CG48 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
UBCP0CG48 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 SPDYE19P-201ENST00000338590 713 ntBASIC13.01□□□□□ -0.33
UBCP0CG48 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 METTL26-204ENST00000397665 558 ntTSL 2 BASIC13.01□□□□□ -0.33
UBCP0CG48 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC13.01□□□□□ -0.33
UBCP0CG48 SERF2-209ENST00000409646 559 ntTSL 4 BASIC13.01□□□□□ -0.33
UBCP0CG48 SOCS2P1-201ENST00000417727 557 ntBASIC13.01□□□□□ -0.33
UBCP0CG48 AL442647.2-201ENST00000429864 857 ntBASIC13.01□□□□□ -0.33
UBCP0CG48 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 METTL21AP1-201ENST00000438852 635 ntBASIC13.01□□□□□ -0.33
UBCP0CG48 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC13.01□□□□□ -0.33
UBCP0CG48 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC13.01□□□□□ -0.33
UBCP0CG48 AC093004.1-201ENST00000508850 424 ntBASIC13.01□□□□□ -0.33
UBCP0CG48 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13.01□□□□□ -0.33
UBCP0CG48 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC13.01□□□□□ -0.33
UBCP0CG48 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC13.01□□□□□ -0.33
UBCP0CG48 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC13.01□□□□□ -0.33
UBCP0CG48 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC13.01□□□□□ -0.33
UBCP0CG48 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.01□□□□□ -0.33
UBCP0CG48 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.01□□□□□ -0.33
UBCP0CG48 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC13.01□□□□□ -0.33
UBCP0CG48 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 AL136172.1-201ENST00000598590 1394 ntBASIC13.01□□□□□ -0.33
UBCP0CG48 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
UBCP0CG48 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
UBCP0CG48 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
UBCP0CG48 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 LRRC59-203ENST00000576448 1531 ntBASIC13.01□□□□□ -0.33
UBCP0CG48 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC13.01□□□□□ -0.33
UBCP0CG48 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.01□□□□□ -0.33
UBCP0CG48 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
UBCP0CG48 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
UBCP0CG48 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
UBCP0CG48 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
UBCP0CG48 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.01□□□□□ -0.33
UBCP0CG48 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
UBCP0CG48 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13□□□□□ -0.33
UBCP0CG48 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBCP0CG48 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
UBCP0CG48 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13□□□□□ -0.33
UBCP0CG48 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
UBCP0CG48 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13□□□□□ -0.33
UBCP0CG48 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
UBCP0CG48 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBCP0CG48 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13□□□□□ -0.33
UBCP0CG48 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
UBCP0CG48 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBCP0CG48 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13□□□□□ -0.33
UBCP0CG48 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13□□□□□ -0.33
UBCP0CG48 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
UBCP0CG48 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
UBCP0CG48 AC011840.2-201ENST00000563063 1520 ntBASIC13□□□□□ -0.33
UBCP0CG48 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC13□□□□□ -0.33
UBCP0CG48 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms