Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 FAM86JP-201ENST00000467239 1910 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC11.47□□□□□ -0.57
CXCL1P09341 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC11.47□□□□□ -0.57
CXCL1P09341 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 RN7SL832P-201ENST00000607781 1756 ntBASIC11.47□□□□□ -0.57
CXCL1P09341 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 KRT33B-201ENST00000251646 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC11.47□□□□□ -0.57
CXCL1P09341 AL607033.1-201ENST00000623900 1599 ntBASIC11.47□□□□□ -0.57
CXCL1P09341 Z98257.2-202ENST00000641138 1548 ntBASIC11.47□□□□□ -0.57
CXCL1P09341 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
CXCL1P09341 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
CXCL1P09341 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC11.47□□□□□ -0.57
CXCL1P09341 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC11.47□□□□□ -0.57
CXCL1P09341 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 AC074386.1-202ENST00000463561 864 ntBASIC11.47□□□□□ -0.57
CXCL1P09341 FXR1-221ENST00000491674 365 ntTSL 2 BASIC11.47□□□□□ -0.57
CXCL1P09341 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC11.47□□□□□ -0.57
CXCL1P09341 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC11.47□□□□□ -0.57
CXCL1P09341 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC11.47□□□□□ -0.57
CXCL1P09341 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC11.47□□□□□ -0.57
CXCL1P09341 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 PDPK2P-202ENST00000562415 1191 ntBASIC11.47□□□□□ -0.57
CXCL1P09341 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC11.47□□□□□ -0.57
CXCL1P09341 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 Z83851.2-201ENST00000609564 659 ntBASIC11.47□□□□□ -0.57
CXCL1P09341 AC116407.3-201ENST00000623905 1129 ntBASIC11.47□□□□□ -0.57
CXCL1P09341 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC11.47□□□□□ -0.57
CXCL1P09341 OCA2-202ENST00000354638 3186 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 POMT1-203ENST00000372228 3123 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 EDARADD-202ENST00000359362 3097 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
CXCL1P09341 AP003969.2-201ENST00000623739 2275 ntBASIC11.47□□□□□ -0.57
CXCL1P09341 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.57
CXCL1P09341 HERC6-202ENST00000273960 3473 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
CXCL1P09341 C2-209ENST00000452323 1999 ntTSL 2 BASIC11.47□□□□□ -0.57
CXCL1P09341 UAP1L1-201ENST00000360271 3201 ntTSL 2 BASIC11.47□□□□□ -0.57
CXCL1P09341 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC11.47□□□□□ -0.57
CXCL1P09341 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC11.46□□□□□ -0.57
CXCL1P09341 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
CXCL1P09341 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 DQX1-202ENST00000404568 2689 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
CXCL1P09341 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC11.46□□□□□ -0.57
CXCL1P09341 AC036108.2-201ENST00000566974 2562 ntTSL 2 BASIC11.46□□□□□ -0.57
CXCL1P09341 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
CXCL1P09341 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.57
CXCL1P09341 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC11.46□□□□□ -0.57
CXCL1P09341 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 NRP2-202ENST00000357118 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 AGAP6-202ENST00000412531 2372 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 AC060814.4-201ENST00000594169 2163 ntBASIC11.46□□□□□ -0.57
CXCL1P09341 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC11.46□□□□□ -0.57
CXCL1P09341 DFFB-205ENST00000378209 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC11.46□□□□□ -0.57
CXCL1P09341 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
CXCL1P09341 EMBP1-201ENST00000458200 901 ntBASIC11.46□□□□□ -0.57
CXCL1P09341 RN7SL589P-201ENST00000481268 310 ntBASIC11.46□□□□□ -0.57
CXCL1P09341 FAM86C2P-203ENST00000528684 1004 ntBASIC11.46□□□□□ -0.57
CXCL1P09341 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
CXCL1P09341 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC11.46□□□□□ -0.57
CXCL1P09341 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC11.46□□□□□ -0.57
CXCL1P09341 CMC2-214ENST00000565925 640 ntTSL 5 BASIC11.46□□□□□ -0.57
CXCL1P09341 INO80E-210ENST00000567705 880 ntTSL 3 BASIC11.46□□□□□ -0.57
CXCL1P09341 LITAF-211ENST00000572255 516 ntTSL 4 BASIC11.46□□□□□ -0.57
CXCL1P09341 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC11.46□□□□□ -0.57
CXCL1P09341 NAA38-207ENST00000576861 556 ntTSL 3 BASIC11.46□□□□□ -0.57
CXCL1P09341 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC11.46□□□□□ -0.57
CXCL1P09341 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC11.46□□□□□ -0.57
CXCL1P09341 SLC25A17-217ENST00000544408 2060 ntTSL 2 BASIC11.46□□□□□ -0.57
CXCL1P09341 FAM156A-208ENST00000615092 2098 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.57
CXCL1P09341 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
CXCL1P09341 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
CXCL1P09341 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms