Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 OR2K2-202ENST00000374428 1038 ntBASIC18.6■□□□□ 0.57
NPHP1O15259 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC18.6■□□□□ 0.57
NPHP1O15259 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
NPHP1O15259 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.6■□□□□ 0.57
NPHP1O15259 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC18.6■□□□□ 0.57
NPHP1O15259 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
NPHP1O15259 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NPHP1O15259 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
NPHP1O15259 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC18.59■□□□□ 0.57
NPHP1O15259 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 SERF2-209ENST00000409646 559 ntTSL 4 BASIC18.59■□□□□ 0.57
NPHP1O15259 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC18.59■□□□□ 0.57
NPHP1O15259 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC18.59■□□□□ 0.57
NPHP1O15259 AC026320.2-201ENST00000434379 478 ntBASIC18.59■□□□□ 0.57
NPHP1O15259 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
NPHP1O15259 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC18.59■□□□□ 0.57
NPHP1O15259 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 RN7SL258P-201ENST00000478664 300 ntBASIC18.59■□□□□ 0.57
NPHP1O15259 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC18.59■□□□□ 0.57
NPHP1O15259 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 TPM1-223ENST00000560445 485 ntTSL 3 BASIC18.59■□□□□ 0.57
NPHP1O15259 STUB1-204ENST00000564370 875 ntTSL 2 BASIC18.59■□□□□ 0.57
NPHP1O15259 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
NPHP1O15259 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC18.59■□□□□ 0.57
NPHP1O15259 MIR6769A-201ENST00000617340 73 ntBASIC18.59■□□□□ 0.57
NPHP1O15259 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
NPHP1O15259 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
NPHP1O15259 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.59■□□□□ 0.57
NPHP1O15259 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC18.59■□□□□ 0.57
NPHP1O15259 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC18.59■□□□□ 0.57
NPHP1O15259 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC18.59■□□□□ 0.57
NPHP1O15259 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
NPHP1O15259 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 AC090616.6-203ENST00000579186 1945 ntBASIC18.59■□□□□ 0.57
NPHP1O15259 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NPHP1O15259 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
NPHP1O15259 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
NPHP1O15259 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
NPHP1O15259 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC18.58■□□□□ 0.57
NPHP1O15259 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
NPHP1O15259 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.58■□□□□ 0.57
NPHP1O15259 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
NPHP1O15259 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC18.58■□□□□ 0.57
NPHP1O15259 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
NPHP1O15259 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NPHP1O15259 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NPHP1O15259 AL355334.1-201ENST00000417713 215 ntBASIC18.58■□□□□ 0.56
NPHP1O15259 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
NPHP1O15259 AC114501.1-201ENST00000445949 172 ntBASIC18.58■□□□□ 0.56
NPHP1O15259 RPL7P35-201ENST00000446943 740 ntBASIC18.58■□□□□ 0.56
NPHP1O15259 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC18.58■□□□□ 0.56
NPHP1O15259 AC087045.2-201ENST00000606279 1003 ntBASIC18.58■□□□□ 0.56
NPHP1O15259 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC18.58■□□□□ 0.56
NPHP1O15259 AL157813.1-201ENST00000612996 587 ntBASIC18.58■□□□□ 0.56
NPHP1O15259 AP001065.2-201ENST00000617205 644 ntBASIC18.58■□□□□ 0.56
NPHP1O15259 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
NPHP1O15259 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
NPHP1O15259 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
NPHP1O15259 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NPHP1O15259 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
NPHP1O15259 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
NPHP1O15259 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.58■□□□□ 0.56
NPHP1O15259 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NPHP1O15259 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NPHP1O15259 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NPHP1O15259 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC18.58■□□□□ 0.56
NPHP1O15259 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC18.57■□□□□ 0.56
NPHP1O15259 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC18.57■□□□□ 0.56
NPHP1O15259 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms