Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CTDP1Q9Y5B0 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 MIR193BHG-211ENST00000641433 5365 ntBASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 MRPL37P1-201ENST00000592451 1337 ntBASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 VDAC1P1-201ENST00000439229 848 ntBASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 AC016629.1-201ENST00000596579 586 ntBASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 Z98259.2-201ENST00000641583 609 ntBASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC17.03■□□□□ 0.32
CTDP1Q9Y5B0 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 RSPO1-202ENST00000401068 2320 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 CMC1-204ENST00000423894 549 ntTSL 2 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 AL353637.1-201ENST00000451571 732 ntBASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 PARP8-218ENST00000513738 596 ntTSL 4 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 AC134698.3-201ENST00000523880 214 ntBASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 RN7SL190P-201ENST00000582519 257 ntBASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.02■□□□□ 0.32
CTDP1Q9Y5B0 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CTDP1Q9Y5B0 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CTDP1Q9Y5B0 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
CTDP1Q9Y5B0 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CTDP1Q9Y5B0 AC136759.1-202ENST00000530858 2194 ntBASIC17.02■□□□□ 0.31
CTDP1Q9Y5B0 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.02■□□□□ 0.31
CTDP1Q9Y5B0 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.02■□□□□ 0.31
CTDP1Q9Y5B0 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
CTDP1Q9Y5B0 MVK-214ENST00000629016 1591 ntTSL 5 BASIC17.02■□□□□ 0.31
CTDP1Q9Y5B0 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CTDP1Q9Y5B0 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CTDP1Q9Y5B0 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms