Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
SHROOM4Q9ULL8 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
SHROOM4Q9ULL8 FTLP5-201ENST00000586853 534 ntBASIC27.64■■■□□ 2.01
SHROOM4Q9ULL8 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 TCAF2P1-201ENST00000291129 2421 ntBASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 HNRNPA1P27-201ENST00000412087 955 ntBASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC27.63■■■□□ 2.01
SHROOM4Q9ULL8 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 AC018529.2-202ENST00000611482 3087 ntBASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 HLA-DMA-203ENST00000395305 777 ntBASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 OR2R1P-201ENST00000441404 914 ntBASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SHROOM4Q9ULL8 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 PEBP1P2-201ENST00000603980 558 ntBASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
SHROOM4Q9ULL8 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 AC092135.3-201ENST00000624151 1846 ntBASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 AP002414.2-201ENST00000591780 3365 ntBASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 F10-203ENST00000409306 1450 ntTSL 3 BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 Z69890.1-201ENST00000382990 339 ntBASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 MT3-203ENST00000565838 421 ntTSL 3 BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC27.6■■■□□ 2.01
SHROOM4Q9ULL8 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms