Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 AC023908.3-201ENST00000564211 3047 ntBASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 FGD5P1-202ENST00000614866 2498 ntBASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
TRIM39Q9HCM9 AC013726.1-201ENST00000563747 2285 ntBASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 MYO15B-237ENST00000642007 4893 ntBASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 AC007292.2-201ENST00000593524 1812 ntBASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 AC087386.2-201ENST00000623212 4637 ntBASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 MIR326-201ENST00000362220 95 ntBASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 ACTBP11-201ENST00000436287 1126 ntBASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 MTX1P1-201ENST00000440904 838 ntBASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 RPSAP36-202ENST00000494591 1261 ntBASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 KLK3-211ENST00000597483 810 ntTSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 AL136301.1-201ENST00000615830 422 ntBASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 AP001002.3-201ENST00000623482 206 ntBASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
TRIM39Q9HCM9 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 AC018529.2-202ENST00000611482 3087 ntBASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 NDUFAB1P1-201ENST00000404262 460 ntBASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 PFN1P12-201ENST00000455938 534 ntBASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 DERL2-202ENST00000570848 657 ntTSL 5 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.68□□□□□ -0.06
TRIM39Q9HCM9 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms