Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
RPAP1Q9BWH6 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RPAP1Q9BWH6 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
RPAP1Q9BWH6 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RPAP1Q9BWH6 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC17.83■□□□□ 0.44
RPAP1Q9BWH6 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RPAP1Q9BWH6 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 AC022447.6-201ENST00000515522 438 ntBASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 AC008825.2-201ENST00000603374 718 ntBASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 AP000346.4-201ENST00000614827 381 ntBASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
RPAP1Q9BWH6 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 FAM58BP-201ENST00000439056 645 ntBASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 AL596276.2-201ENST00000447525 331 ntBASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 AC125604.1-201ENST00000496255 707 ntBASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 AC136759.1-202ENST00000530858 2194 ntBASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 RN7SL163P-201ENST00000583100 276 ntBASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 AC132192.2-201ENST00000596206 1147 ntBASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 AL805961.1-203ENST00000641078 1258 ntBASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 AL928921.2-201ENST00000641325 2442 ntBASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
RPAP1Q9BWH6 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RPAP1Q9BWH6 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RPAP1Q9BWH6 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RPAP1Q9BWH6 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms