Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC14.39□□□□□ -0.11
HNF4AP41235 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
HNF4AP41235 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 AC097359.2-201ENST00000604992 2389 ntBASIC14.39□□□□□ -0.11
HNF4AP41235 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.39□□□□□ -0.11
HNF4AP41235 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.39□□□□□ -0.11
HNF4AP41235 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.39□□□□□ -0.11
HNF4AP41235 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HNF4AP41235 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
HNF4AP41235 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HNF4AP41235 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HNF4AP41235 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 ZBTB12BP-201ENST00000314232 1122 ntBASIC14.39□□□□□ -0.11
HNF4AP41235 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
HNF4AP41235 AC005229.1-201ENST00000392885 409 ntBASIC14.39□□□□□ -0.11
HNF4AP41235 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.39□□□□□ -0.11
HNF4AP41235 CROCCP4-201ENST00000457096 498 ntBASIC14.39□□□□□ -0.11
HNF4AP41235 FTH1P14-201ENST00000482930 551 ntBASIC14.39□□□□□ -0.11
HNF4AP41235 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
HNF4AP41235 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.39□□□□□ -0.11
HNF4AP41235 AC131206.1-201ENST00000538078 1211 ntBASIC14.39□□□□□ -0.11
HNF4AP41235 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.39□□□□□ -0.11
HNF4AP41235 AC244669.2-201ENST00000612320 853 ntBASIC14.39□□□□□ -0.11
HNF4AP41235 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 ENPP7P14-201ENST00000621765 1040 ntBASIC14.39□□□□□ -0.11
HNF4AP41235 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HNF4AP41235 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HNF4AP41235 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HNF4AP41235 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.39□□□□□ -0.11
HNF4AP41235 MRPL37P1-201ENST00000592451 1337 ntBASIC14.39□□□□□ -0.11
HNF4AP41235 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HNF4AP41235 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HNF4AP41235 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
HNF4AP41235 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.38□□□□□ -0.11
HNF4AP41235 AL136172.1-201ENST00000598590 1394 ntBASIC14.38□□□□□ -0.11
HNF4AP41235 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.38□□□□□ -0.11
HNF4AP41235 FUK-202ENST00000378912 3925 ntTSL 2 BASIC14.38□□□□□ -0.11
HNF4AP41235 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
HNF4AP41235 AC092933.1-201ENST00000393644 945 ntBASIC14.38□□□□□ -0.11
HNF4AP41235 POM121L8P-201ENST00000417732 1281 ntBASIC14.38□□□□□ -0.11
HNF4AP41235 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.38□□□□□ -0.11
HNF4AP41235 C2orf27AP3-201ENST00000434123 579 ntBASIC14.38□□□□□ -0.11
HNF4AP41235 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.38□□□□□ -0.11
HNF4AP41235 POM121L9P-203ENST00000441984 1285 ntBASIC14.38□□□□□ -0.11
HNF4AP41235 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.38□□□□□ -0.11
HNF4AP41235 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC14.38□□□□□ -0.11
HNF4AP41235 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.38□□□□□ -0.11
HNF4AP41235 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.38□□□□□ -0.11
HNF4AP41235 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC14.38□□□□□ -0.11
HNF4AP41235 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.38□□□□□ -0.11
HNF4AP41235 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.38□□□□□ -0.11
HNF4AP41235 AL354718.3-201ENST00000616414 581 ntBASIC14.38□□□□□ -0.11
HNF4AP41235 CR382287.1-201ENST00000623954 586 ntBASIC14.38□□□□□ -0.11
HNF4AP41235 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
HNF4AP41235 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
HNF4AP41235 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 AL138709.1-201ENST00000614840 1693 ntBASIC14.38□□□□□ -0.11
HNF4AP41235 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.38□□□□□ -0.11
HNF4AP41235 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HNF4AP41235 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
HNF4AP41235 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
HNF4AP41235 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 AC063926.2-201ENST00000623766 1308 ntBASIC14.38□□□□□ -0.11
HNF4AP41235 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.38□□□□□ -0.11
HNF4AP41235 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HNF4AP41235 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 AC087386.2-201ENST00000623212 4637 ntBASIC14.37□□□□□ -0.11
HNF4AP41235 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.37□□□□□ -0.11
HNF4AP41235 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.37□□□□□ -0.11
HNF4AP41235 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HNF4AP41235 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms