Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC023157.3-201ENST00000619086 2088 ntBASIC19.23■□□□□ 0.67
HOXC9P31274 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 FES-204ENST00000414248 2327 ntTSL 2 BASIC19.23■□□□□ 0.67
HOXC9P31274 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC9P31274 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC19.23■□□□□ 0.67
HOXC9P31274 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC9P31274 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC9P31274 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC19.23■□□□□ 0.67
HOXC9P31274 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC9P31274 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC19.23■□□□□ 0.67
HOXC9P31274 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 ASB15-207ENST00000540573 1651 ntTSL 2 BASIC19.23■□□□□ 0.67
HOXC9P31274 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 AC215219.1-201ENST00000400706 1817 ntBASIC19.23■□□□□ 0.67
HOXC9P31274 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC9P31274 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC19.23■□□□□ 0.67
HOXC9P31274 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HOXC9P31274 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC19.22■□□□□ 0.67
HOXC9P31274 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
HOXC9P31274 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
HOXC9P31274 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
HOXC9P31274 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC19.22■□□□□ 0.67
HOXC9P31274 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
HOXC9P31274 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC19.22■□□□□ 0.67
HOXC9P31274 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC19.22■□□□□ 0.67
HOXC9P31274 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC19.22■□□□□ 0.67
HOXC9P31274 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC19.22■□□□□ 0.67
HOXC9P31274 AP003398.1-201ENST00000531124 318 ntBASIC19.22■□□□□ 0.67
HOXC9P31274 HERC2P11-201ENST00000562845 725 ntBASIC19.22■□□□□ 0.67
HOXC9P31274 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC19.22■□□□□ 0.67
HOXC9P31274 AC100756.2-201ENST00000569537 736 ntBASIC19.22■□□□□ 0.67
HOXC9P31274 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC19.22■□□□□ 0.67
HOXC9P31274 RN7SL665P-201ENST00000578793 300 ntBASIC19.22■□□□□ 0.67
HOXC9P31274 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC19.22■□□□□ 0.67
HOXC9P31274 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC19.22■□□□□ 0.67
HOXC9P31274 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC19.22■□□□□ 0.67
HOXC9P31274 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC19.22■□□□□ 0.67
HOXC9P31274 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC19.22■□□□□ 0.67
HOXC9P31274 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HOXC9P31274 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC19.22■□□□□ 0.67
HOXC9P31274 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
HOXC9P31274 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
HOXC9P31274 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
HOXC9P31274 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.21■□□□□ 0.67
HOXC9P31274 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 AC006372.4-201ENST00000624122 1543 ntBASIC19.21■□□□□ 0.67
HOXC9P31274 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
HOXC9P31274 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
HOXC9P31274 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC19.21■□□□□ 0.67
HOXC9P31274 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC19.21■□□□□ 0.67
HOXC9P31274 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC19.21■□□□□ 0.67
HOXC9P31274 ERP29P1-201ENST00000442902 706 ntBASIC19.21■□□□□ 0.67
HOXC9P31274 AC004837.1-201ENST00000446267 564 ntBASIC19.21■□□□□ 0.67
HOXC9P31274 DPY19L2P5-201ENST00000456300 331 ntBASIC19.21■□□□□ 0.67
HOXC9P31274 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC19.21■□□□□ 0.67
HOXC9P31274 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC19.21■□□□□ 0.67
HOXC9P31274 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HOXC9P31274 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC19.21■□□□□ 0.67
HOXC9P31274 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms