Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
RFX1P22670 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX1P22670 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX1P22670 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
RFX1P22670 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
RFX1P22670 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC16.11■□□□□ 0.17
RFX1P22670 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX1P22670 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.11■□□□□ 0.17
RFX1P22670 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX1P22670 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX1P22670 SCARNA20.5-201ENST00000516991 142 ntBASIC16.11■□□□□ 0.17
RFX1P22670 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.11■□□□□ 0.17
RFX1P22670 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC16.11■□□□□ 0.17
RFX1P22670 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
RFX1P22670 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX1P22670 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX1P22670 AL138725.1-201ENST00000407347 1314 ntBASIC16.11■□□□□ 0.17
RFX1P22670 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.11■□□□□ 0.17
RFX1P22670 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.11■□□□□ 0.17
RFX1P22670 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.11■□□□□ 0.17
RFX1P22670 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
RFX1P22670 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
RFX1P22670 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
RFX1P22670 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.11■□□□□ 0.17
RFX1P22670 AC097359.2-201ENST00000604992 2389 ntBASIC16.11■□□□□ 0.17
RFX1P22670 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
RFX1P22670 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.1■□□□□ 0.17
RFX1P22670 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC16.1■□□□□ 0.17
RFX1P22670 AL662890.1-201ENST00000396818 632 ntBASIC16.1■□□□□ 0.17
RFX1P22670 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC16.1■□□□□ 0.17
RFX1P22670 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.1■□□□□ 0.17
RFX1P22670 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC16.1■□□□□ 0.17
RFX1P22670 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 VPS18-202ENST00000558474 873 ntTSL 3 BASIC16.1■□□□□ 0.17
RFX1P22670 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC16.1■□□□□ 0.17
RFX1P22670 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 MIR4741-201ENST00000579822 90 ntBASIC16.1■□□□□ 0.17
RFX1P22670 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.1■□□□□ 0.17
RFX1P22670 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RFX1P22670 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.1■□□□□ 0.17
RFX1P22670 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.1■□□□□ 0.17
RFX1P22670 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RFX1P22670 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms