Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 TFRC-203ENST00000420415 4814 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.863e-9■□□□□ 9.1
YBX3P16989 TFRC-201ENST00000360110 5111 ntAPPRIS P3 TSL 1 (best) BASIC9.08□□□□□ -0.963e-9■□□□□ 9.1
YBX3P16989 TFRC-205ENST00000426789 354 ntTSL 34.89□□□□□ -1.633e-9■□□□□ 9.1
YBX3P16989 ZNF277-202ENST00000361946 1736 ntTSL 1 (best)19.65■□□□□ 0.742e-7■□□□□ 9.1
YBX3P16989 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.082e-7■□□□□ 9.1
YBX3P16989 ZNF277-204ENST00000421864 651 ntTSL 37.42□□□□□ -1.222e-7■□□□□ 9.1
YBX3P16989 TOR1AIP2-205ENST00000495650 888 ntTSL 216.24■□□□□ 0.196e-9■□□□□ 9.1
YBX3P16989 DDOST-204ENST00000475210 328 ntTSL 214.16□□□□□ -0.147e-10■□□□□ 9.1
YBX3P16989 EIF3E-214ENST00000522352 611 ntTSL 39.51□□□□□ -0.893e-21■□□□□ 9.1
YBX3P16989 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC8.77□□□□□ -1.013e-21■□□□□ 9.1
YBX3P16989 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.073e-21■□□□□ 9.1
YBX3P16989 EIF3E-208ENST00000519517 726 ntTSL 37.11□□□□□ -1.273e-21■□□□□ 9.1
YBX3P16989 EIF3E-209ENST00000519627 697 ntTSL 26.81□□□□□ -1.323e-21■□□□□ 9.1
YBX3P16989 EIF3E-212ENST00000521614 1990 ntTSL 24.14□□□□□ -1.753e-21■□□□□ 9.1
YBX3P16989 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.146e-11■□□□□ 9.1
YBX3P16989 SNAP29-202ENST00000439214 681 ntTSL 36.73□□□□□ -1.336e-11■□□□□ 9.1
YBX3P16989 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.743e-9■□□□□ 9.1
YBX3P16989 VARS-227ENST00000489979 658 ntTSL 319.71■□□□□ 0.753e-7■□□□□ 9.1
YBX3P16989 CTPS1-205ENST00000464283 643 ntTSL 57.36□□□□□ -1.232e-7■□□□□ 9.1
YBX3P16989 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.171e-6■□□□□ 9
YBX3P16989 UBXN6-207ENST00000591919 1613 ntTSL 521.84■■□□□ 1.091e-6■□□□□ 9
YBX3P16989 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.52■■□□□ 1.041e-6■□□□□ 9
YBX3P16989 UBXN6-209ENST00000592515 403 ntTSL 516.76■□□□□ 0.271e-6■□□□□ 9
YBX3P16989 PHGDH-205ENST00000482968 1754 ntTSL 218.09■□□□□ 0.493e-7■□□□□ 9
YBX3P16989 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.872e-9■□□□□ 9
YBX3P16989 WEE1-201ENST00000299613 3436 ntTSL 2 BASIC10.87□□□□□ -0.672e-9■□□□□ 9
YBX3P16989 WEE1-206ENST00000530175 838 ntTSL 39.41□□□□□ -0.92e-9■□□□□ 9
YBX3P16989 WEE1-205ENST00000527848 465 ntTSL 29.19□□□□□ -0.942e-9■□□□□ 9
YBX3P16989 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.183e-6■□□□□ 9
YBX3P16989 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.264e-10■□□□□ 9
YBX3P16989 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.864e-10■□□□□ 9
YBX3P16989 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.624e-10■□□□□ 9
YBX3P16989 PTOV1-203ENST00000594165 986 ntTSL 324.36■■□□□ 1.494e-10■□□□□ 9
YBX3P16989 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC19.78■□□□□ 0.764e-10■□□□□ 9
YBX3P16989 PTOV1-210ENST00000598325 1438 ntTSL 519.16■□□□□ 0.664e-10■□□□□ 9
YBX3P16989 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC18.64■□□□□ 0.574e-10■□□□□ 9
YBX3P16989 PTOV1-218ENST00000601612 1480 ntTSL 217.01■□□□□ 0.314e-10■□□□□ 9
YBX3P16989 HMBS-215ENST00000542822 936 ntTSL 525.38■■□□□ 1.653e-9■□□□□ 9
YBX3P16989 HMBS-208ENST00000536813 507 ntTSL 321.34■■□□□ 1.013e-9■□□□□ 9
YBX3P16989 HMBS-207ENST00000536185 441 ntTSL 320.63■□□□□ 0.893e-9■□□□□ 9
YBX3P16989 HMBS-222ENST00000545621 1282 ntTSL 1 (best)20.63■□□□□ 0.893e-9■□□□□ 9
YBX3P16989 HMBS-225ENST00000546302 707 ntTSL 520.63■□□□□ 0.893e-9■□□□□ 9
YBX3P16989 HMBS-218ENST00000543821 562 ntTSL 416.83■□□□□ 0.283e-9■□□□□ 9
YBX3P16989 HMBS-211ENST00000539986 1155 ntTSL 315.01□□□□□ -0.013e-9■□□□□ 9
YBX3P16989 HMBS-205ENST00000535253 755 ntTSL 414.83□□□□□ -0.043e-9■□□□□ 9
YBX3P16989 HMBS-220ENST00000544360 695 ntTSL 314.83□□□□□ -0.043e-9■□□□□ 9
YBX3P16989 HMBS-206ENST00000535793 832 ntTSL 511.86□□□□□ -0.513e-9■□□□□ 9
YBX3P16989 HMBS-213ENST00000542345 882 ntTSL 39.85□□□□□ -0.833e-9■□□□□ 9
YBX3P16989 SLC13A5-212ENST00000576323 574 ntTSL 422.69■■□□□ 1.223e-9■□□□□ 9
YBX3P16989 SLC13A5-206ENST00000572352 538 ntTSL 420.6■□□□□ 0.893e-9■□□□□ 9
YBX3P16989 SLC13A5-205ENST00000572094 986 ntTSL 520.27■□□□□ 0.843e-9■□□□□ 9
YBX3P16989 SLC13A5-211ENST00000575230 547 ntTSL 520.27■□□□□ 0.843e-9■□□□□ 9
YBX3P16989 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.96■□□□□ 0.633e-9■□□□□ 9
YBX3P16989 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC17.27■□□□□ 0.363e-9■□□□□ 9
YBX3P16989 CTCF-203ENST00000566078 1627 ntTSL 236.28■■■■□ 3.46e-9■□□□□ 9
YBX3P16989 DRAM2-208ENST00000484310 1872 ntTSL 1 (best)27.37■■□□□ 1.971e-8■□□□□ 9
YBX3P16989 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.921e-8■□□□□ 9
YBX3P16989 TAPBP-235ENST00000437116 1239 ntTSL 1 (best)24.71■■□□□ 1.554e-13■□□□□ 9
YBX3P16989 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.431e-11■□□□□ 9
YBX3P16989 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.82■■□□□ 1.46e-9■□□□□ 9
YBX3P16989 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.299e-7■□□□□ 9
YBX3P16989 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC22.71■■□□□ 1.231e-11■□□□□ 9
YBX3P16989 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC22.67■■□□□ 1.229e-7■□□□□ 9
YBX3P16989 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC22.62■■□□□ 1.219e-7■□□□□ 9
YBX3P16989 YY1AP1-218ENST00000454523 810 ntAPPRIS ALT2 TSL 222.16■■□□□ 1.141e-11■□□□□ 9
YBX3P16989 YY1AP1-221ENST00000476093 1037 ntTSL 321.64■■□□□ 1.051e-11■□□□□ 9
YBX3P16989 YY1AP1-217ENST00000443231 932 ntAPPRIS ALT2 TSL 321.6■■□□□ 1.051e-11■□□□□ 9
YBX3P16989 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.031e-8■□□□□ 9
YBX3P16989 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.13■□□□□ 0.979e-7■□□□□ 9
YBX3P16989 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.961e-11■□□□□ 9
YBX3P16989 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.946e-9■□□□□ 9
YBX3P16989 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.919e-7■□□□□ 9
YBX3P16989 TAPBP-239ENST00000476333 726 ntTSL 220.66■□□□□ 0.94e-13■□□□□ 9
YBX3P16989 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.799e-7■□□□□ 9
YBX3P16989 TAPBP-240ENST00000480730 2202 ntTSL 1 (best)19.88■□□□□ 0.774e-13■□□□□ 9
YBX3P16989 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.71■□□□□ 0.759e-7■□□□□ 9
YBX3P16989 FIP1L1-212ENST00000513975 1464 ntTSL 219.16■□□□□ 0.669e-7■□□□□ 9
YBX3P16989 MTA2-207ENST00000532239 532 ntTSL 418.98■□□□□ 0.636e-9■□□□□ 9
YBX3P16989 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.621e-11■□□□□ 9
YBX3P16989 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC18.54■□□□□ 0.561e-8■□□□□ 9
YBX3P16989 YY1AP1-220ENST00000476027 927 ntTSL 318.42■□□□□ 0.541e-11■□□□□ 9
YBX3P16989 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.56e-9■□□□□ 9
YBX3P16989 ALDH2-203ENST00000548536 1760 ntTSL 318.12■□□□□ 0.499e-7■□□□□ 9
YBX3P16989 AP1M1-215ENST00000592703 583 ntTSL 218.03■□□□□ 0.489e-7■□□□□ 9
YBX3P16989 YY1AP1-207ENST00000361140 2701 ntTSL 1 (best)17.64■□□□□ 0.411e-11■□□□□ 9
YBX3P16989 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.379e-7■□□□□ 9
YBX3P16989 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.291e-11■□□□□ 9
YBX3P16989 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.259e-7■□□□□ 9
YBX3P16989 MIR4435-2HG-201ENST00000308604 552 ntTSL 1 (best) BASIC16.59■□□□□ 0.251e-8■□□□□ 9
YBX3P16989 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.46■□□□□ 0.221e-11■□□□□ 9
YBX3P16989 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC16.13■□□□□ 0.179e-7■□□□□ 9
YBX3P16989 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.141e-11■□□□□ 9
YBX3P16989 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.129e-7■□□□□ 9
YBX3P16989 DRAM2-203ENST00000462092 802 ntTSL 215.72■□□□□ 0.111e-8■□□□□ 9
YBX3P16989 RPL13A-205ENST00000474171 521 ntTSL 215.18■□□□□ 0.021e-323■□□□□ 9
YBX3P16989 CIB2-203ENST00000557818 669 ntTSL 314.71□□□□□ -0.059e-7■□□□□ 9
YBX3P16989 MIR4435-2HG-212ENST00000444301 666 ntTSL 3 BASIC14.65□□□□□ -0.061e-8■□□□□ 9
YBX3P16989 LARP1-206ENST00000518677 827 ntTSL 514.63□□□□□ -0.079e-7■□□□□ 9
YBX3P16989 MTA2-203ENST00000526844 627 ntTSL 314.35□□□□□ -0.116e-9■□□□□ 9
YBX3P16989 RBM8A-208ENST00000634130 565 ntTSL 214.27□□□□□ -0.139e-7■□□□□ 9
Retrieved 100 of 29,075 protein–RNA pairs in 123 ms