Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MIR766-201ENST00000390223 111 ntBASIC14.77□□□□□ -0.04
COL6A3P12111 SRP9P1-201ENST00000445874 261 ntBASIC14.77□□□□□ -0.04
COL6A3P12111 AC093700.1-201ENST00000503348 717 ntBASIC14.77□□□□□ -0.04
COL6A3P12111 AC027290.1-201ENST00000537827 484 ntTSL 5 BASIC14.77□□□□□ -0.04
COL6A3P12111 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
COL6A3P12111 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC14.77□□□□□ -0.04
COL6A3P12111 AC009132.1-201ENST00000565194 320 ntBASIC14.77□□□□□ -0.04
COL6A3P12111 NAA60-236ENST00000577013 575 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A3P12111 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC14.77□□□□□ -0.04
COL6A3P12111 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A3P12111 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A3P12111 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.77□□□□□ -0.04
COL6A3P12111 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A3P12111 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.77□□□□□ -0.04
COL6A3P12111 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL6A3P12111 GLIPR2-201ENST00000377959 812 ntTSL 3 BASIC14.77□□□□□ -0.05
COL6A3P12111 NME6-211ENST00000447314 621 ntTSL 3 BASIC14.77□□□□□ -0.05
COL6A3P12111 SMCR2-201ENST00000456090 564 ntTSL 2 BASIC14.77□□□□□ -0.05
COL6A3P12111 AC116914.2-201ENST00000571741 291 ntTSL 5 BASIC14.77□□□□□ -0.05
COL6A3P12111 AL133467.4-201ENST00000602953 725 ntBASIC14.77□□□□□ -0.05
COL6A3P12111 PTMAP5-202ENST00000607242 1162 ntBASIC14.77□□□□□ -0.05
COL6A3P12111 APOBEC3A-205ENST00000618553 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A3P12111 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.77□□□□□ -0.05
COL6A3P12111 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A3P12111 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A3P12111 AC002350.2-201ENST00000623894 1828 ntBASIC14.77□□□□□ -0.05
COL6A3P12111 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A3P12111 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.77□□□□□ -0.05
COL6A3P12111 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
COL6A3P12111 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.77□□□□□ -0.05
COL6A3P12111 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.05
COL6A3P12111 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A3P12111 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.77□□□□□ -0.05
COL6A3P12111 NDUFB11-201ENST00000276062 948 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A3P12111 MIR4435-2HG-201ENST00000308604 552 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A3P12111 LINC00544-201ENST00000400540 1031 ntTSL 5 BASIC14.77□□□□□ -0.05
COL6A3P12111 AC010997.2-201ENST00000427610 260 ntTSL 3 BASIC14.77□□□□□ -0.05
COL6A3P12111 AL356289.1-203ENST00000439795 789 ntTSL 5 BASIC14.77□□□□□ -0.05
COL6A3P12111 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A3P12111 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC14.77□□□□□ -0.05
COL6A3P12111 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A3P12111 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A3P12111 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL6A3P12111 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.76□□□□□ -0.05
COL6A3P12111 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC14.76□□□□□ -0.05
COL6A3P12111 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.76□□□□□ -0.05
COL6A3P12111 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC14.76□□□□□ -0.05
COL6A3P12111 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL6A3P12111 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL6A3P12111 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
COL6A3P12111 ABCD3-201ENST00000315713 884 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC14.76□□□□□ -0.05
COL6A3P12111 PSMB8-AS1-206ENST00000458296 958 ntTSL 3 BASIC14.76□□□□□ -0.05
COL6A3P12111 RN7SL677P-201ENST00000466970 319 ntBASIC14.76□□□□□ -0.05
COL6A3P12111 AC005740.1-201ENST00000515639 522 ntBASIC14.76□□□□□ -0.05
COL6A3P12111 ELOBP2-201ENST00000526184 355 ntBASIC14.76□□□□□ -0.05
COL6A3P12111 BMS1P8-203ENST00000567036 614 ntTSL 3 BASIC14.76□□□□□ -0.05
COL6A3P12111 GRAPL-204ENST00000577213 866 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
COL6A3P12111 AC092634.5-206ENST00000593670 812 ntTSL 5 BASIC14.76□□□□□ -0.05
COL6A3P12111 AL158032.2-201ENST00000616818 195 ntBASIC14.76□□□□□ -0.05
COL6A3P12111 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.76□□□□□ -0.05
COL6A3P12111 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
COL6A3P12111 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC14.76□□□□□ -0.05
COL6A3P12111 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.76□□□□□ -0.05
COL6A3P12111 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.76□□□□□ -0.05
COL6A3P12111 REG3A-201ENST00000305165 718 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL6A3P12111 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
COL6A3P12111 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC14.76□□□□□ -0.05
COL6A3P12111 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
COL6A3P12111 AL137077.1-201ENST00000442115 528 ntBASIC14.76□□□□□ -0.05
COL6A3P12111 GYG1-209ENST00000483267 801 ntTSL 2 BASIC14.76□□□□□ -0.05
COL6A3P12111 LINC02447-202ENST00000501888 2146 ntBASIC14.76□□□□□ -0.05
COL6A3P12111 TBC1D3P6-201ENST00000505954 962 ntBASIC14.76□□□□□ -0.05
COL6A3P12111 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC14.76□□□□□ -0.05
COL6A3P12111 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC14.76□□□□□ -0.05
COL6A3P12111 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC14.76□□□□□ -0.05
COL6A3P12111 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC14.76□□□□□ -0.05
COL6A3P12111 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL6A3P12111 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
COL6A3P12111 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A3P12111 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
COL6A3P12111 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.75□□□□□ -0.05
COL6A3P12111 MRPL45P2-201ENST00000425159 927 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms