Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 BX284668.4-201ENST00000453917 508 ntBASIC13.48□□□□□ -0.25
HOXD4P09016 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD4P09016 FOS-206ENST00000555347 1280 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD4P09016 AC106820.3-201ENST00000561653 397 ntBASIC13.48□□□□□ -0.25
HOXD4P09016 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.48□□□□□ -0.25
HOXD4P09016 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD4P09016 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC13.48□□□□□ -0.25
HOXD4P09016 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD4P09016 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC13.48□□□□□ -0.25
HOXD4P09016 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD4P09016 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD4P09016 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
HOXD4P09016 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD4P09016 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.48□□□□□ -0.25
HOXD4P09016 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD4P09016 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD4P09016 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC13.48□□□□□ -0.25
HOXD4P09016 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD4P09016 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD4P09016 DKFZP434H168-201ENST00000567381 1905 ntBASIC13.48□□□□□ -0.25
HOXD4P09016 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD4P09016 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD4P09016 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.48□□□□□ -0.25
HOXD4P09016 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD4P09016 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD4P09016 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
HOXD4P09016 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD4P09016 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD4P09016 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.48□□□□□ -0.25
HOXD4P09016 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HOXD4P09016 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
HOXD4P09016 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC13.47□□□□□ -0.25
HOXD4P09016 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
HOXD4P09016 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
HOXD4P09016 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC13.47□□□□□ -0.25
HOXD4P09016 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.47□□□□□ -0.25
HOXD4P09016 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.47□□□□□ -0.25
HOXD4P09016 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 AL662890.1-201ENST00000396818 632 ntBASIC13.47□□□□□ -0.25
HOXD4P09016 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
HOXD4P09016 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
HOXD4P09016 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HOXD4P09016 FNTAP2-201ENST00000430308 634 ntBASIC13.47□□□□□ -0.25
HOXD4P09016 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC13.47□□□□□ -0.25
HOXD4P09016 AL391280.1-201ENST00000506969 1062 ntBASIC13.47□□□□□ -0.25
HOXD4P09016 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC13.47□□□□□ -0.25
HOXD4P09016 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HOXD4P09016 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 ACTG1P17-201ENST00000558391 1119 ntBASIC13.47□□□□□ -0.25
HOXD4P09016 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC13.47□□□□□ -0.25
HOXD4P09016 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC13.47□□□□□ -0.25
HOXD4P09016 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.25
HOXD4P09016 AC007663.3-201ENST00000609632 465 ntBASIC13.47□□□□□ -0.25
HOXD4P09016 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.47□□□□□ -0.25
HOXD4P09016 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.47□□□□□ -0.25
HOXD4P09016 SLC9A3P3-201ENST00000457608 2229 ntBASIC13.47□□□□□ -0.25
HOXD4P09016 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 AP000593.2-201ENST00000542775 1433 ntBASIC13.47□□□□□ -0.25
HOXD4P09016 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HOXD4P09016 AP003680.1-201ENST00000598970 3660 ntBASIC13.46□□□□□ -0.25
HOXD4P09016 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HOXD4P09016 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXD4P09016 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
HOXD4P09016 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC13.46□□□□□ -0.25
HOXD4P09016 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXD4P09016 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
HOXD4P09016 AC105250.1-201ENST00000509378 2057 ntBASIC13.46□□□□□ -0.25
HOXD4P09016 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXD4P09016 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
HOXD4P09016 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.46□□□□□ -0.25
HOXD4P09016 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXD4P09016 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXD4P09016 AC092127.1-201ENST00000567093 3455 ntBASIC13.46□□□□□ -0.25
HOXD4P09016 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXD4P09016 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.46□□□□□ -0.25
HOXD4P09016 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC13.46□□□□□ -0.25
HOXD4P09016 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HOXD4P09016 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.46□□□□□ -0.25
HOXD4P09016 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
HOXD4P09016 CHMP1AP1-201ENST00000445563 662 ntBASIC13.46□□□□□ -0.25
HOXD4P09016 AC005077.2-201ENST00000449786 690 ntBASIC13.46□□□□□ -0.25
HOXD4P09016 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC13.46□□□□□ -0.25
HOXD4P09016 RERG-205ENST00000537647 935 ntTSL 2 BASIC13.46□□□□□ -0.25
HOXD4P09016 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms