Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MBD4O95243 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC17.54■□□□□ 0.4
MBD4O95243 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC17.54■□□□□ 0.4
MBD4O95243 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC17.54■□□□□ 0.4
MBD4O95243 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
MBD4O95243 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MBD4O95243 MYADML-201ENST00000474610 2147 ntBASIC17.54■□□□□ 0.4
MBD4O95243 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MBD4O95243 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
MBD4O95243 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC17.54■□□□□ 0.4
MBD4O95243 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC17.54■□□□□ 0.4
MBD4O95243 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
MBD4O95243 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
MBD4O95243 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC17.53■□□□□ 0.4
MBD4O95243 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC17.53■□□□□ 0.4
MBD4O95243 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 AC113367.3-201ENST00000508316 1912 ntBASIC17.53■□□□□ 0.4
MBD4O95243 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
MBD4O95243 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
MBD4O95243 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
MBD4O95243 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC17.53■□□□□ 0.4
MBD4O95243 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.53■□□□□ 0.4
MBD4O95243 AC005077.2-201ENST00000449786 690 ntBASIC17.53■□□□□ 0.4
MBD4O95243 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 AC009779.1-201ENST00000551138 283 ntBASIC17.53■□□□□ 0.4
MBD4O95243 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC17.53■□□□□ 0.4
MBD4O95243 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC17.53■□□□□ 0.4
MBD4O95243 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC17.53■□□□□ 0.4
MBD4O95243 AL132994.2-201ENST00000603120 687 ntBASIC17.53■□□□□ 0.4
MBD4O95243 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC17.53■□□□□ 0.4
MBD4O95243 AL136295.7-201ENST00000619226 1200 ntBASIC17.53■□□□□ 0.4
MBD4O95243 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC17.53■□□□□ 0.4
MBD4O95243 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
MBD4O95243 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 AC140479.7-201ENST00000636301 2332 ntBASIC17.53■□□□□ 0.4
MBD4O95243 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
MBD4O95243 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
MBD4O95243 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
MBD4O95243 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.52■□□□□ 0.4
MBD4O95243 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
MBD4O95243 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC17.52■□□□□ 0.4
MBD4O95243 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
MBD4O95243 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC17.52■□□□□ 0.4
MBD4O95243 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 AL390755.1-201ENST00000623716 2027 ntBASIC17.52■□□□□ 0.4
MBD4O95243 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.52■□□□□ 0.4
MBD4O95243 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.52■□□□□ 0.4
MBD4O95243 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC17.52■□□□□ 0.4
MBD4O95243 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
MBD4O95243 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 SLC16A6P1-201ENST00000413214 1059 ntBASIC17.52■□□□□ 0.4
MBD4O95243 BCYRN1-201ENST00000418539 200 ntBASIC17.52■□□□□ 0.4
MBD4O95243 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 SPTLC1P5-201ENST00000450718 252 ntBASIC17.52■□□□□ 0.4
MBD4O95243 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC17.52■□□□□ 0.4
MBD4O95243 AC125604.1-201ENST00000496255 707 ntBASIC17.52■□□□□ 0.4
MBD4O95243 FADS2-212ENST00000522639 360 ntTSL 5 BASIC17.52■□□□□ 0.4
MBD4O95243 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC17.52■□□□□ 0.4
MBD4O95243 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC17.52■□□□□ 0.4
MBD4O95243 SYT17-208ENST00000568433 812 ntTSL 3 BASIC17.52■□□□□ 0.4
MBD4O95243 FADS2-215ENST00000574708 385 ntTSL 3 BASIC17.52■□□□□ 0.4
MBD4O95243 AC133540.1-201ENST00000620845 1019 ntBASIC17.52■□□□□ 0.4
MBD4O95243 DDX5-235ENST00000630471 473 ntTSL 4 BASIC17.52■□□□□ 0.4
MBD4O95243 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.52■□□□□ 0.4
MBD4O95243 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
MBD4O95243 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
MBD4O95243 AP001267.2-201ENST00000532619 2086 ntBASIC17.52■□□□□ 0.39
MBD4O95243 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
MBD4O95243 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
MBD4O95243 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
MBD4O95243 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
MBD4O95243 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
MBD4O95243 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms