Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC12.65□□□□□ -0.38
SDCBPO00560 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC12.65□□□□□ -0.38
SDCBPO00560 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC12.65□□□□□ -0.38
SDCBPO00560 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
SDCBPO00560 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
SDCBPO00560 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC12.65□□□□□ -0.38
SDCBPO00560 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
SDCBPO00560 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC12.65□□□□□ -0.38
SDCBPO00560 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
SDCBPO00560 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
SDCBPO00560 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
SDCBPO00560 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC12.65□□□□□ -0.39
SDCBPO00560 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.39
SDCBPO00560 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC12.65□□□□□ -0.39
SDCBPO00560 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC12.64□□□□□ -0.39
SDCBPO00560 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC12.64□□□□□ -0.39
SDCBPO00560 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC12.64□□□□□ -0.39
SDCBPO00560 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.64□□□□□ -0.39
SDCBPO00560 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
SDCBPO00560 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC12.64□□□□□ -0.39
SDCBPO00560 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC12.64□□□□□ -0.39
SDCBPO00560 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC12.64□□□□□ -0.39
SDCBPO00560 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
SDCBPO00560 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
SDCBPO00560 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC12.64□□□□□ -0.39
SDCBPO00560 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 MEP1AP4-201ENST00000423244 1087 ntBASIC12.64□□□□□ -0.39
SDCBPO00560 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC12.64□□□□□ -0.39
SDCBPO00560 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC12.64□□□□□ -0.39
SDCBPO00560 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 INGX-202ENST00000489074 768 ntBASIC12.64□□□□□ -0.39
SDCBPO00560 AC023310.3-201ENST00000557027 670 ntBASIC12.64□□□□□ -0.39
SDCBPO00560 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC12.64□□□□□ -0.39
SDCBPO00560 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC12.64□□□□□ -0.39
SDCBPO00560 AC100756.1-201ENST00000562736 682 ntBASIC12.64□□□□□ -0.39
SDCBPO00560 AC138749.3-201ENST00000567691 622 ntBASIC12.64□□□□□ -0.39
SDCBPO00560 NAA60-208ENST00000570819 833 ntTSL 2 BASIC12.64□□□□□ -0.39
SDCBPO00560 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
SDCBPO00560 AL049840.4-201ENST00000602422 811 ntBASIC12.64□□□□□ -0.39
SDCBPO00560 AC116165.1-201ENST00000611806 668 ntBASIC12.64□□□□□ -0.39
SDCBPO00560 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC12.64□□□□□ -0.39
SDCBPO00560 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
SDCBPO00560 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC12.64□□□□□ -0.39
SDCBPO00560 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 AC005562.1-201ENST00000583030 3219 ntBASIC12.64□□□□□ -0.39
SDCBPO00560 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
SDCBPO00560 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 AC105206.1-202ENST00000314927 2368 ntBASIC12.64□□□□□ -0.39
SDCBPO00560 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
SDCBPO00560 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC12.64□□□□□ -0.39
SDCBPO00560 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC12.64□□□□□ -0.39
SDCBPO00560 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC12.64□□□□□ -0.39
SDCBPO00560 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
SDCBPO00560 GOLGA8VP-201ENST00000559009 1798 ntBASIC12.64□□□□□ -0.39
SDCBPO00560 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
SDCBPO00560 AC004899.2-201ENST00000622993 3860 ntBASIC12.63□□□□□ -0.39
SDCBPO00560 ADK-205ENST00000539909 1866 ntTSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC12.63□□□□□ -0.39
SDCBPO00560 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SDCBPO00560 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms