Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 ODCP-201ENST00000459650 1639 ntBASIC11.16□□□□□ -0.62
COL6A5A8TX70 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 AC004923.1-201ENST00000527543 776 ntTSL 5 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 PRR20FP-201ENST00000603320 180 ntBASIC11.16□□□□□ -0.62
COL6A5A8TX70 AL031768.1-201ENST00000606542 701 ntBASIC11.16□□□□□ -0.62
COL6A5A8TX70 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 AL807742.1-201ENST00000636678 1160 ntTSL 5 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.62
COL6A5A8TX70 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC11.16□□□□□ -0.62
COL6A5A8TX70 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 AC010491.1-201ENST00000563101 2797 ntBASIC11.15□□□□□ -0.62
COL6A5A8TX70 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 ABCD1P4-201ENST00000399687 604 ntBASIC11.15□□□□□ -0.62
COL6A5A8TX70 RN7SKP212-201ENST00000410851 328 ntBASIC11.15□□□□□ -0.62
COL6A5A8TX70 RBM14-205ENST00000443702 732 ntTSL 3 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 AC005042.2-201ENST00000449526 510 ntTSL 4 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 RN7SL487P-201ENST00000468140 344 ntBASIC11.15□□□□□ -0.62
COL6A5A8TX70 PRSS3P1-201ENST00000503996 742 ntBASIC11.15□□□□□ -0.62
COL6A5A8TX70 KCNE3-202ENST00000525550 935 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 AP003043.1-201ENST00000527804 547 ntTSL 4 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 HNRNPA1P72-201ENST00000529511 967 ntBASIC11.15□□□□□ -0.62
COL6A5A8TX70 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 LINC01002-223ENST00000633179 407 ntTSL 5 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC11.15□□□□□ -0.62
COL6A5A8TX70 OR2A1-AS1-203ENST00000468575 568 ntBASIC11.15□□□□□ -0.62
COL6A5A8TX70 GUCY2EP-203ENST00000531117 1918 ntBASIC11.15□□□□□ -0.62
COL6A5A8TX70 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 CSRP2-207ENST00000552330 910 ntTSL 3 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 AC145285.5-201ENST00000562217 361 ntBASIC11.15□□□□□ -0.62
COL6A5A8TX70 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC11.15□□□□□ -0.62
COL6A5A8TX70 AC239600.1-201ENST00000603201 462 ntBASIC11.15□□□□□ -0.62
COL6A5A8TX70 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC11.15□□□□□ -0.63
COL6A5A8TX70 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.63
COL6A5A8TX70 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC11.14□□□□□ -0.63
COL6A5A8TX70 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC11.14□□□□□ -0.63
COL6A5A8TX70 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC11.14□□□□□ -0.63
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms