Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 CLUHP2-201ENST00000426660 1303 ntBASIC13.39□□□□□ -0.27
HIF3AQ9Y2N7 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 POM121L8P-201ENST00000417732 1281 ntBASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 POM121L9P-203ENST00000441984 1285 ntBASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 RN7SL48P-201ENST00000579283 293 ntBASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 AC011840.2-201ENST00000563063 1520 ntBASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
HIF3AQ9Y2N7 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 MSTO2P-201ENST00000314835 1709 ntBASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 BAATP1-201ENST00000412284 1225 ntBASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 ACTG1P3-201ENST00000431775 1114 ntBASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 MIR4745-201ENST00000577608 62 ntBASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 AC145423.3-201ENST00000615987 467 ntBASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 ENPP7P14-201ENST00000621765 1040 ntBASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
HIF3AQ9Y2N7 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms