Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CNTN3Q9P232 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 RN7SKP214-201ENST00000364208 315 ntBASIC15.81■□□□□ 0.12
CNTN3Q9P232 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 TSACC-208ENST00000481479 741 ntTSL 2 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 AC091544.8-201ENST00000619490 361 ntBASIC15.81■□□□□ 0.12
CNTN3Q9P232 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 AC138627.1-207ENST00000641560 1006 ntBASIC15.81■□□□□ 0.12
CNTN3Q9P232 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CNTN3Q9P232 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC15.81■□□□□ 0.12
CNTN3Q9P232 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 KRT18P36-201ENST00000411618 1276 ntBASIC15.8■□□□□ 0.12
CNTN3Q9P232 SLC25A24P2-201ENST00000415059 510 ntBASIC15.8■□□□□ 0.12
CNTN3Q9P232 ACTG1P2-201ENST00000415776 1125 ntBASIC15.8■□□□□ 0.12
CNTN3Q9P232 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 ACTG1P11-201ENST00000425411 1125 ntBASIC15.8■□□□□ 0.12
CNTN3Q9P232 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 KLK3-207ENST00000595952 969 ntTSL 3 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CNTN3Q9P232 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CNTN3Q9P232 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
CNTN3Q9P232 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
CNTN3Q9P232 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
CNTN3Q9P232 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC15.79■□□□□ 0.12
CNTN3Q9P232 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.79■□□□□ 0.12
CNTN3Q9P232 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CNTN3Q9P232 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC15.79■□□□□ 0.12
CNTN3Q9P232 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
CNTN3Q9P232 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
CNTN3Q9P232 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CNTN3Q9P232 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms