Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 AL136172.1-201ENST00000598590 1394 ntBASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.43□□□□□ -0.1
CCDC28BQ9BUN5 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 SALL4P5-201ENST00000419001 1760 ntBASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 DMBT1P1-203ENST00000636837 4628 ntBASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 HNRNPUL1-204ENST00000392006 3555 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 AC007969.1-201ENST00000433675 447 ntBASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 AL844908.2-201ENST00000609461 460 ntBASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 AL603764.1-201ENST00000636452 321 ntBASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
CCDC28BQ9BUN5 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 MRPL37P1-201ENST00000592451 1337 ntBASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
CCDC28BQ9BUN5 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms