Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
CLHC1Q8NHS4 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 USP4-203ENST00000415188 1454 ntTSL 3 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 AL136172.1-201ENST00000598590 1394 ntBASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 AC131212.3-201ENST00000624087 4219 ntBASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 AC126335.2-201ENST00000623362 4637 ntBASIC14.26□□□□□ -0.13
CLHC1Q8NHS4 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 AC003102.2-201ENST00000589195 1469 ntBASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 MIR661-201ENST00000384842 89 ntBASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 AC007969.1-201ENST00000433675 447 ntBASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 TSPY16P-201ENST00000449843 468 ntBASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 ELK1P1-201ENST00000485699 580 ntBASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 GIMAP3P-201ENST00000495150 836 ntBASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC14.25□□□□□ -0.13
CLHC1Q8NHS4 WASH4P-201ENST00000564273 1246 ntBASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms