Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 GAS5-209ENST00000430245 723 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 CHCHD2P2-201ENST00000503744 321 ntBASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 GOLGA2P7-209ENST00000560408 745 ntBASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AC004554.1-201ENST00000422830 1468 ntBASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AP002353.1-201ENST00000528257 1599 ntBASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AC011270.2-201ENST00000624293 2550 ntBASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 COX5A-205ENST00000568517 582 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AC124068.2-201ENST00000569473 1109 ntBASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 FTLP5-201ENST00000586853 534 ntBASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AC008972.2-201ENST00000606587 494 ntBASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC88AQ3V6T2 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC88AQ3V6T2 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC17.64■□□□□ 0.42
CCDC88AQ3V6T2 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.42
CCDC88AQ3V6T2 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.64■□□□□ 0.42
CCDC88AQ3V6T2 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 AC021305.1-201ENST00000520656 1514 ntBASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 AJ011931.1-201ENST00000618749 2492 ntBASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 OR5BD1P-201ENST00000532527 817 ntBASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CCDC88AQ3V6T2 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 GEMIN8P4-201ENST00000380526 729 ntBASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 RN7SL23P-201ENST00000484055 275 ntBASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC88AQ3V6T2 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms