Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.27□□□□□ -0.28
SCN1BQ07699 OS9-218ENST00000551035 2246 ntTSL 2 BASIC13.27□□□□□ -0.28
SCN1BQ07699 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
SCN1BQ07699 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.28
SCN1BQ07699 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13.27□□□□□ -0.28
SCN1BQ07699 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
SCN1BQ07699 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC13.27□□□□□ -0.29
SCN1BQ07699 HNRNPFP1-201ENST00000391730 1133 ntBASIC13.27□□□□□ -0.29
SCN1BQ07699 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
SCN1BQ07699 SPDYE7P-202ENST00000420373 878 ntBASIC13.27□□□□□ -0.29
SCN1BQ07699 CNN2P11-201ENST00000429351 262 ntBASIC13.27□□□□□ -0.29
SCN1BQ07699 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC13.27□□□□□ -0.29
SCN1BQ07699 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 EEF1DP4-201ENST00000446006 880 ntBASIC13.27□□□□□ -0.29
SCN1BQ07699 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC13.27□□□□□ -0.29
SCN1BQ07699 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC13.27□□□□□ -0.29
SCN1BQ07699 BANF1P1-201ENST00000553684 263 ntBASIC13.27□□□□□ -0.29
SCN1BQ07699 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC13.27□□□□□ -0.29
SCN1BQ07699 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.27□□□□□ -0.29
SCN1BQ07699 AL589739.1-201ENST00000607720 493 ntBASIC13.27□□□□□ -0.29
SCN1BQ07699 AC009093.7-201ENST00000623853 1223 ntBASIC13.27□□□□□ -0.29
SCN1BQ07699 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC13.27□□□□□ -0.29
SCN1BQ07699 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
SCN1BQ07699 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC13.27□□□□□ -0.29
SCN1BQ07699 AL035456.1-201ENST00000456064 1369 ntBASIC13.27□□□□□ -0.29
SCN1BQ07699 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
SCN1BQ07699 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
SCN1BQ07699 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 CICP16-201ENST00000502609 2813 ntBASIC13.27□□□□□ -0.29
SCN1BQ07699 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC13.27□□□□□ -0.29
SCN1BQ07699 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.27□□□□□ -0.29
SCN1BQ07699 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC13.27□□□□□ -0.29
SCN1BQ07699 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC13.27□□□□□ -0.29
SCN1BQ07699 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
SCN1BQ07699 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC13.27□□□□□ -0.29
SCN1BQ07699 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC13.27□□□□□ -0.29
SCN1BQ07699 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
SCN1BQ07699 CROT-203ENST00000419147 2959 ntTSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 APBB2-211ENST00000506352 3316 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
SCN1BQ07699 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC13.26□□□□□ -0.29
SCN1BQ07699 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
SCN1BQ07699 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC13.26□□□□□ -0.29
SCN1BQ07699 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
SCN1BQ07699 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
SCN1BQ07699 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
SCN1BQ07699 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC13.26□□□□□ -0.29
SCN1BQ07699 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 ZNRF3-202ENST00000406323 2878 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
SCN1BQ07699 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC13.26□□□□□ -0.29
SCN1BQ07699 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
SCN1BQ07699 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC13.26□□□□□ -0.29
SCN1BQ07699 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.26□□□□□ -0.29
SCN1BQ07699 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.26□□□□□ -0.29
SCN1BQ07699 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms