Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC13.24□□□□□ -0.29
H3F3AP84243 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.24□□□□□ -0.29
H3F3AP84243 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
H3F3AP84243 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
H3F3AP84243 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
H3F3AP84243 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.23□□□□□ -0.29
H3F3AP84243 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
H3F3AP84243 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
H3F3AP84243 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.23□□□□□ -0.29
H3F3AP84243 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.23□□□□□ -0.29
H3F3AP84243 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.23□□□□□ -0.29
H3F3AP84243 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.23□□□□□ -0.29
H3F3AP84243 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
H3F3AP84243 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 AL023775.1-201ENST00000454907 1746 ntBASIC13.23□□□□□ -0.29
H3F3AP84243 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
H3F3AP84243 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
H3F3AP84243 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.23□□□□□ -0.29
H3F3AP84243 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.23□□□□□ -0.29
H3F3AP84243 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
H3F3AP84243 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC13.23□□□□□ -0.29
H3F3AP84243 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.23□□□□□ -0.29
H3F3AP84243 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.23□□□□□ -0.29
H3F3AP84243 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.23□□□□□ -0.29
H3F3AP84243 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.23□□□□□ -0.29
H3F3AP84243 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.23□□□□□ -0.29
H3F3AP84243 AP006547.1-201ENST00000563435 692 ntBASIC13.23□□□□□ -0.29
H3F3AP84243 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.23□□□□□ -0.29
H3F3AP84243 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.23□□□□□ -0.29
H3F3AP84243 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
H3F3AP84243 AP001267.2-201ENST00000532619 2086 ntBASIC13.23□□□□□ -0.29
H3F3AP84243 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC13.23□□□□□ -0.29
H3F3AP84243 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
H3F3AP84243 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC13.23□□□□□ -0.29
H3F3AP84243 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
H3F3AP84243 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC13.23□□□□□ -0.29
H3F3AP84243 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
H3F3AP84243 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC13.22□□□□□ -0.29
H3F3AP84243 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
H3F3AP84243 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.22□□□□□ -0.29
H3F3AP84243 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.22□□□□□ -0.29
H3F3AP84243 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
H3F3AP84243 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.22□□□□□ -0.29
H3F3AP84243 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.22□□□□□ -0.29
H3F3AP84243 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
H3F3AP84243 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC13.22□□□□□ -0.29
H3F3AP84243 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
H3F3AP84243 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.22□□□□□ -0.29
H3F3AP84243 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.22□□□□□ -0.29
H3F3AP84243 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.22□□□□□ -0.29
H3F3AP84243 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC13.22□□□□□ -0.29
H3F3AP84243 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
H3F3AP84243 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
H3F3AP84243 HIST2H2BB-201ENST00000449108 381 ntBASIC13.22□□□□□ -0.29
H3F3AP84243 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.22□□□□□ -0.29
H3F3AP84243 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
H3F3AP84243 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
H3F3AP84243 CFL1-212ENST00000531413 636 ntTSL 3 BASIC13.22□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms