Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RFC3P40938 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RFC3P40938 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RFC3P40938 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.61□□□□□ -0.23
RFC3P40938 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RFC3P40938 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.6□□□□□ -0.23
RFC3P40938 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
RFC3P40938 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC13.6□□□□□ -0.23
RFC3P40938 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC13.6□□□□□ -0.23
RFC3P40938 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC13.6□□□□□ -0.23
RFC3P40938 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
RFC3P40938 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
RFC3P40938 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
RFC3P40938 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 NKAIN1P1-201ENST00000435754 582 ntBASIC13.6□□□□□ -0.23
RFC3P40938 AKR7A2P1-201ENST00000460134 915 ntBASIC13.6□□□□□ -0.23
RFC3P40938 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 AC126915.1-201ENST00000522847 1038 ntBASIC13.6□□□□□ -0.23
RFC3P40938 NEU3-202ENST00000526068 431 ntTSL 2 BASIC13.6□□□□□ -0.23
RFC3P40938 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.6□□□□□ -0.23
RFC3P40938 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC13.6□□□□□ -0.23
RFC3P40938 AC138696.2-201ENST00000607376 223 ntBASIC13.6□□□□□ -0.23
RFC3P40938 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC13.6□□□□□ -0.23
RFC3P40938 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.6□□□□□ -0.23
RFC3P40938 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC13.6□□□□□ -0.23
RFC3P40938 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
RFC3P40938 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC13.59□□□□□ -0.23
RFC3P40938 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.59□□□□□ -0.23
RFC3P40938 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.59□□□□□ -0.23
RFC3P40938 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC13.59□□□□□ -0.23
RFC3P40938 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
RFC3P40938 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.59□□□□□ -0.23
RFC3P40938 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
RFC3P40938 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.59□□□□□ -0.23
RFC3P40938 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.59□□□□□ -0.23
RFC3P40938 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC13.59□□□□□ -0.23
RFC3P40938 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.59□□□□□ -0.23
RFC3P40938 E2F3P2-201ENST00000447755 1422 ntBASIC13.59□□□□□ -0.23
RFC3P40938 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.59□□□□□ -0.23
RFC3P40938 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.59□□□□□ -0.23
RFC3P40938 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 AL354877.1-201ENST00000424412 413 ntBASIC13.59□□□□□ -0.23
RFC3P40938 CALR4P-201ENST00000431943 946 ntBASIC13.59□□□□□ -0.23
RFC3P40938 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC13.59□□□□□ -0.23
RFC3P40938 AC005077.2-201ENST00000449786 690 ntBASIC13.59□□□□□ -0.23
RFC3P40938 AC091804.1-201ENST00000486888 567 ntBASIC13.59□□□□□ -0.23
RFC3P40938 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 SCARNA20.5-201ENST00000516991 142 ntBASIC13.59□□□□□ -0.23
RFC3P40938 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.59□□□□□ -0.23
RFC3P40938 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC13.59□□□□□ -0.23
RFC3P40938 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
RFC3P40938 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.59□□□□□ -0.23
RFC3P40938 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC13.59□□□□□ -0.23
RFC3P40938 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.59□□□□□ -0.23
RFC3P40938 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
RFC3P40938 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
RFC3P40938 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
RFC3P40938 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms