Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC17.16■□□□□ 0.34
COL4A5P29400 AC004686.1-201ENST00000605113 538 ntBASIC17.16■□□□□ 0.34
COL4A5P29400 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC17.16■□□□□ 0.34
COL4A5P29400 AC005274.1-201ENST00000623460 802 ntBASIC17.16■□□□□ 0.34
COL4A5P29400 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC17.16■□□□□ 0.34
COL4A5P29400 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC17.16■□□□□ 0.34
COL4A5P29400 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
COL4A5P29400 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
COL4A5P29400 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL4A5P29400 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC17.16■□□□□ 0.34
COL4A5P29400 AC064801.2-201ENST00000625052 1303 ntBASIC17.16■□□□□ 0.34
COL4A5P29400 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC17.16■□□□□ 0.34
COL4A5P29400 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
COL4A5P29400 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC17.16■□□□□ 0.34
COL4A5P29400 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.16■□□□□ 0.34
COL4A5P29400 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
COL4A5P29400 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
COL4A5P29400 AC073210.1-201ENST00000414799 232 ntBASIC17.16■□□□□ 0.34
COL4A5P29400 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL4A5P29400 AC104961.1-201ENST00000427605 771 ntBASIC17.16■□□□□ 0.34
COL4A5P29400 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC17.16■□□□□ 0.34
COL4A5P29400 EEF1DP2-201ENST00000433698 843 ntBASIC17.16■□□□□ 0.34
COL4A5P29400 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
COL4A5P29400 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC17.16■□□□□ 0.34
COL4A5P29400 GGNBP1-204ENST00000613113 887 ntBASIC17.16■□□□□ 0.34
COL4A5P29400 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC17.16■□□□□ 0.34
COL4A5P29400 AC090510.3-201ENST00000615831 821 ntBASIC17.16■□□□□ 0.34
COL4A5P29400 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
COL4A5P29400 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
COL4A5P29400 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
COL4A5P29400 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.16■□□□□ 0.34
COL4A5P29400 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A5P29400 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC17.15■□□□□ 0.34
COL4A5P29400 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 GOLGA8UP-201ENST00000527159 1755 ntBASIC17.15■□□□□ 0.34
COL4A5P29400 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.15■□□□□ 0.34
COL4A5P29400 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
COL4A5P29400 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
COL4A5P29400 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
COL4A5P29400 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
COL4A5P29400 KCNK18-201ENST00000334549 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 TNNT1-202ENST00000356783 934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC17.15■□□□□ 0.34
COL4A5P29400 GOLGA6L16P-201ENST00000441780 1299 ntBASIC17.15■□□□□ 0.34
COL4A5P29400 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC17.15■□□□□ 0.34
COL4A5P29400 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC17.15■□□□□ 0.34
COL4A5P29400 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC17.15■□□□□ 0.34
COL4A5P29400 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC17.15■□□□□ 0.34
COL4A5P29400 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 AL031673.1-201ENST00000611460 466 ntBASIC17.15■□□□□ 0.34
COL4A5P29400 AL591424.3-201ENST00000614278 872 ntBASIC17.15■□□□□ 0.34
COL4A5P29400 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A5P29400 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A5P29400 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
COL4A5P29400 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC17.15■□□□□ 0.34
COL4A5P29400 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
COL4A5P29400 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.15■□□□□ 0.34
COL4A5P29400 PAX6-264ENST00000640125 1375 ntTSL 5 BASIC17.14■□□□□ 0.34
COL4A5P29400 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.34
COL4A5P29400 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
COL4A5P29400 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A5P29400 PCBD1-201ENST00000299299 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
COL4A5P29400 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
COL4A5P29400 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC17.14■□□□□ 0.33
COL4A5P29400 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC17.14■□□□□ 0.33
COL4A5P29400 SERBP1P2-201ENST00000436888 1164 ntBASIC17.14■□□□□ 0.33
COL4A5P29400 RNLS-203ENST00000437752 525 ntTSL 2 BASIC17.14■□□□□ 0.33
COL4A5P29400 RN7SL128P-201ENST00000467883 305 ntBASIC17.14■□□□□ 0.33
COL4A5P29400 SLC25A15P3-201ENST00000505530 290 ntBASIC17.14■□□□□ 0.33
COL4A5P29400 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
COL4A5P29400 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC17.14■□□□□ 0.33
COL4A5P29400 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms