Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 AGGF1P1-201ENST00000509500 2073 ntBASIC11.34□□□□□ -0.59
HLA-DMBP28068 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 GRAP-202ENST00000395635 834 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 AL645937.2-201ENST00000396808 931 ntBASIC11.34□□□□□ -0.59
HLA-DMBP28068 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 GAPDHP21-201ENST00000450301 1010 ntBASIC11.34□□□□□ -0.59
HLA-DMBP28068 RHOA-206ENST00000454011 889 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 AC026434.2-201ENST00000506094 1078 ntBASIC11.34□□□□□ -0.59
HLA-DMBP28068 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 AC055876.2-201ENST00000531834 546 ntBASIC11.34□□□□□ -0.59
HLA-DMBP28068 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 AC120045.2-201ENST00000567334 178 ntBASIC11.34□□□□□ -0.59
HLA-DMBP28068 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 BRI3BPP1-201ENST00000594224 787 ntBASIC11.34□□□□□ -0.59
HLA-DMBP28068 AC093813.1-201ENST00000605066 256 ntBASIC11.34□□□□□ -0.59
HLA-DMBP28068 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC11.34□□□□□ -0.59
HLA-DMBP28068 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC11.34□□□□□ -0.59
HLA-DMBP28068 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC11.33□□□□□ -0.59
HLA-DMBP28068 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
HLA-DMBP28068 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC11.33□□□□□ -0.6
HLA-DMBP28068 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
HLA-DMBP28068 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 SLC7A15P-201ENST00000424028 1363 ntBASIC11.33□□□□□ -0.6
HLA-DMBP28068 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC11.33□□□□□ -0.6
HLA-DMBP28068 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC11.33□□□□□ -0.6
HLA-DMBP28068 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC11.33□□□□□ -0.6
HLA-DMBP28068 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC11.33□□□□□ -0.6
HLA-DMBP28068 AL139094.1-201ENST00000405549 1188 ntBASIC11.33□□□□□ -0.6
HLA-DMBP28068 AC134915.1-201ENST00000426461 574 ntBASIC11.33□□□□□ -0.6
HLA-DMBP28068 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
HLA-DMBP28068 PTPA-220ENST00000436883 532 ntTSL 4 BASIC11.33□□□□□ -0.6
HLA-DMBP28068 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC11.33□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms