Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC13.81□□□□□ -0.2
COL5A1P20908 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC13.81□□□□□ -0.2
COL5A1P20908 AC006529.1-201ENST00000459978 637 ntBASIC13.81□□□□□ -0.2
COL5A1P20908 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC13.81□□□□□ -0.2
COL5A1P20908 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC13.81□□□□□ -0.2
COL5A1P20908 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC13.81□□□□□ -0.2
COL5A1P20908 SNORD3B-1-201ENST00000577988 758 ntBASIC13.81□□□□□ -0.2
COL5A1P20908 HELLS-212ENST00000630929 400 ntTSL 5 BASIC13.81□□□□□ -0.2
COL5A1P20908 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC13.81□□□□□ -0.2
COL5A1P20908 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
COL5A1P20908 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.81□□□□□ -0.2
COL5A1P20908 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC13.81□□□□□ -0.2
COL5A1P20908 BANP-201ENST00000286122 2368 ntTSL 5 BASIC13.81□□□□□ -0.2
COL5A1P20908 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
COL5A1P20908 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
COL5A1P20908 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
COL5A1P20908 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 AC019109.1-201ENST00000401725 1874 ntBASIC13.81□□□□□ -0.2
COL5A1P20908 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
COL5A1P20908 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC13.81□□□□□ -0.2
COL5A1P20908 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC13.8□□□□□ -0.2
COL5A1P20908 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC13.8□□□□□ -0.2
COL5A1P20908 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 AC106047.2-201ENST00000511723 743 ntBASIC13.8□□□□□ -0.2
COL5A1P20908 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL5A1P20908 AC055811.3-201ENST00000584952 686 ntBASIC13.8□□□□□ -0.2
COL5A1P20908 PLS3-210ENST00000626746 216 ntTSL 4 BASIC13.8□□□□□ -0.2
COL5A1P20908 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
COL5A1P20908 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL5A1P20908 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC13.8□□□□□ -0.2
COL5A1P20908 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.8□□□□□ -0.2
COL5A1P20908 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC13.8□□□□□ -0.2
COL5A1P20908 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
COL5A1P20908 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.8□□□□□ -0.2
COL5A1P20908 AC067931.2-201ENST00000623655 2003 ntBASIC13.8□□□□□ -0.2
COL5A1P20908 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 FMC1-201ENST00000297534 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC13.8□□□□□ -0.2
COL5A1P20908 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL5A1P20908 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
COL5A1P20908 GNG10P1-201ENST00000452289 199 ntBASIC13.8□□□□□ -0.2
COL5A1P20908 TPT1P11-201ENST00000458482 498 ntBASIC13.8□□□□□ -0.2
COL5A1P20908 AC026470.1-201ENST00000478038 846 ntBASIC13.8□□□□□ -0.2
COL5A1P20908 AC095040.1-201ENST00000513286 675 ntBASIC13.8□□□□□ -0.2
COL5A1P20908 AC022447.6-201ENST00000515522 438 ntBASIC13.8□□□□□ -0.2
COL5A1P20908 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC13.8□□□□□ -0.2
COL5A1P20908 AL132994.1-201ENST00000554098 400 ntBASIC13.8□□□□□ -0.2
COL5A1P20908 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC13.8□□□□□ -0.2
COL5A1P20908 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC13.8□□□□□ -0.2
COL5A1P20908 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
COL5A1P20908 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
COL5A1P20908 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
COL5A1P20908 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC13.8□□□□□ -0.2
COL5A1P20908 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.8□□□□□ -0.2
COL5A1P20908 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 AC023824.1-201ENST00000562945 2975 ntBASIC13.8□□□□□ -0.2
COL5A1P20908 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC13.8□□□□□ -0.2
COL5A1P20908 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL5A1P20908 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC13.79□□□□□ -0.2
COL5A1P20908 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
COL5A1P20908 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC13.79□□□□□ -0.2
COL5A1P20908 ZNF436-AS1-201ENST00000335648 2547 ntBASIC13.79□□□□□ -0.2
COL5A1P20908 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
COL5A1P20908 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
COL5A1P20908 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL5A1P20908 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC13.79□□□□□ -0.2
COL5A1P20908 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC13.79□□□□□ -0.2
COL5A1P20908 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms