Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC20.14■□□□□ 0.81
NPHP4O75161 CMC2-204ENST00000562713 573 ntTSL 3 BASIC20.14■□□□□ 0.81
NPHP4O75161 CMC2-209ENST00000565108 399 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP4O75161 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP4O75161 PSME2-217ENST00000615264 874 ntTSL 5 BASIC20.14■□□□□ 0.81
NPHP4O75161 PSME2-218ENST00000630027 185 ntTSL 3 BASIC20.14■□□□□ 0.81
NPHP4O75161 AC245369.7-201ENST00000631386 350 ntBASIC20.14■□□□□ 0.81
NPHP4O75161 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
NPHP4O75161 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP4O75161 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP4O75161 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
NPHP4O75161 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP4O75161 HR-201ENST00000312841 5351 ntTSL 5 BASIC20.14■□□□□ 0.81
NPHP4O75161 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP4O75161 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP4O75161 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP4O75161 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC20.14■□□□□ 0.81
NPHP4O75161 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
NPHP4O75161 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP4O75161 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NPHP4O75161 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.13■□□□□ 0.81
NPHP4O75161 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP4O75161 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP4O75161 RN7SL351P-201ENST00000469306 248 ntBASIC20.13■□□□□ 0.81
NPHP4O75161 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC20.13■□□□□ 0.81
NPHP4O75161 MAX-218ENST00000557746 571 ntTSL 4 BASIC20.13■□□□□ 0.81
NPHP4O75161 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC20.13■□□□□ 0.81
NPHP4O75161 AC016582.2-202ENST00000587765 1094 ntBASIC20.13■□□□□ 0.81
NPHP4O75161 PRKACA-208ENST00000589994 1127 ntTSL 2 BASIC20.13■□□□□ 0.81
NPHP4O75161 AC006986.1-201ENST00000612764 241 ntBASIC20.13■□□□□ 0.81
NPHP4O75161 AL807740.1-201ENST00000636971 567 ntTSL 4 BASIC20.13■□□□□ 0.81
NPHP4O75161 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC20.13■□□□□ 0.81
NPHP4O75161 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC20.13■□□□□ 0.81
NPHP4O75161 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP4O75161 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP4O75161 AL008638.4-201ENST00000624792 1315 ntBASIC20.13■□□□□ 0.81
NPHP4O75161 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC20.13■□□□□ 0.81
NPHP4O75161 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP4O75161 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC20.13■□□□□ 0.81
NPHP4O75161 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC20.13■□□□□ 0.81
NPHP4O75161 AC015688.4-201ENST00000580780 1647 ntBASIC20.13■□□□□ 0.81
NPHP4O75161 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
NPHP4O75161 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP4O75161 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP4O75161 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NPHP4O75161 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
NPHP4O75161 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP4O75161 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP4O75161 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC20.12■□□□□ 0.81
NPHP4O75161 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC20.12■□□□□ 0.81
NPHP4O75161 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP4O75161 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP4O75161 TREX1-203ENST00000456089 629 ntTSL 3 BASIC20.12■□□□□ 0.81
NPHP4O75161 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC20.12■□□□□ 0.81
NPHP4O75161 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC20.12■□□□□ 0.81
NPHP4O75161 AC004923.3-201ENST00000527532 355 ntBASIC20.12■□□□□ 0.81
NPHP4O75161 RN7SL524P-201ENST00000581152 300 ntBASIC20.12■□□□□ 0.81
NPHP4O75161 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
NPHP4O75161 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC20.12■□□□□ 0.81
NPHP4O75161 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC20.12■□□□□ 0.81
NPHP4O75161 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
NPHP4O75161 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP4O75161 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC20.12■□□□□ 0.81
NPHP4O75161 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP4O75161 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
NPHP4O75161 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC20.12■□□□□ 0.81
NPHP4O75161 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC20.12■□□□□ 0.81
NPHP4O75161 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP4O75161 CICP23-201ENST00000605013 2741 ntBASIC20.12■□□□□ 0.81
NPHP4O75161 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP4O75161 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP4O75161 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC20.12■□□□□ 0.81
NPHP4O75161 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP4O75161 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP4O75161 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NPHP4O75161 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
NPHP4O75161 AC126365.1-201ENST00000578585 1514 ntBASIC20.12■□□□□ 0.81
NPHP4O75161 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP4O75161 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
NPHP4O75161 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
NPHP4O75161 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP4O75161 IFITM1-201ENST00000328221 844 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
NPHP4O75161 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP4O75161 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP4O75161 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC20.11■□□□□ 0.81
NPHP4O75161 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC20.11■□□□□ 0.81
NPHP4O75161 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP4O75161 AC092910.2-201ENST00000491262 348 ntBASIC20.11■□□□□ 0.81
NPHP4O75161 SLC25A15P3-201ENST00000505530 290 ntBASIC20.11■□□□□ 0.81
NPHP4O75161 AL359219.1-201ENST00000556311 934 ntBASIC20.11■□□□□ 0.81
NPHP4O75161 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC20.11■□□□□ 0.81
NPHP4O75161 AC005746.3-201ENST00000614751 393 ntBASIC20.11■□□□□ 0.81
NPHP4O75161 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP4O75161 AC112693.3-201ENST00000624819 1983 ntBASIC20.11■□□□□ 0.81
NPHP4O75161 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP4O75161 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP4O75161 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP4O75161 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP4O75161 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NPHP4O75161 KRT8P43-201ENST00000406052 1458 ntBASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms