Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BLOC1S4Q9NUP1 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BLOC1S4Q9NUP1 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
BLOC1S4Q9NUP1 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
BLOC1S4Q9NUP1 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BLOC1S4Q9NUP1 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
BLOC1S4Q9NUP1 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BLOC1S4Q9NUP1 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.37■□□□□ 0.21
BLOC1S4Q9NUP1 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC16.37■□□□□ 0.21
BLOC1S4Q9NUP1 AC244394.1-201ENST00000435000 1665 ntBASIC16.37■□□□□ 0.21
BLOC1S4Q9NUP1 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
BLOC1S4Q9NUP1 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 HPD-204ENST00000543163 1709 ntTSL 5 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 SKA2-202ENST00000437036 625 ntTSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 NOP2-220ENST00000545915 630 ntTSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 EEF1DP1-201ENST00000585891 896 ntBASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 AC067930.6-201ENST00000623257 4947 ntBASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 HSPA8P5-201ENST00000456928 2069 ntBASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
BLOC1S4Q9NUP1 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 AC079178.1-201ENST00000420915 656 ntBASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 AL157407.1-201ENST00000435784 904 ntBASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 ATP5G2P4-201ENST00000442175 420 ntBASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 YBX1P6-201ENST00000442962 1002 ntBASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 AC244157.2-201ENST00000616239 1006 ntBASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
BLOC1S4Q9NUP1 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
BLOC1S4Q9NUP1 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC16.34■□□□□ 0.21
BLOC1S4Q9NUP1 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.34■□□□□ 0.21
BLOC1S4Q9NUP1 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC16.34■□□□□ 0.21
BLOC1S4Q9NUP1 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
BLOC1S4Q9NUP1 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 139.4 ms