Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 NALT1-202ENST00000450304 437 ntTSL 3 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 AL157823.2-201ENST00000452048 669 ntTSL 3 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 CFL1P1-204ENST00000456375 424 ntTSL 3 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 AL358215.1-201ENST00000481350 482 ntTSL 5 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 RN7SKP155-201ENST00000516031 288 ntBASIC14.56□□□□□ -0.08
TTC28Q96AY4 ZNF816-208ENST00000535506 529 ntTSL 4 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 VENTXP3-201ENST00000546480 773 ntBASIC14.56□□□□□ -0.08
TTC28Q96AY4 DTWD1-205ENST00000558653 1131 ntAPPRIS P1 TSL 3 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 FAM69A-204ENST00000615519 865 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 AL031590.1-202ENST00000641466 1737 ntBASIC14.56□□□□□ -0.08
TTC28Q96AY4 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 SLC36A1-211ENST00000616007 1389 ntTSL 2 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 PCDH8P1-201ENST00000428983 2773 ntBASIC14.56□□□□□ -0.08
TTC28Q96AY4 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 CETN3-205ENST00000522842 664 ntTSL 2 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 KLF17P1-201ENST00000547105 1126 ntBASIC14.56□□□□□ -0.08
TTC28Q96AY4 AC145285.5-201ENST00000562217 361 ntBASIC14.56□□□□□ -0.08
TTC28Q96AY4 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
TTC28Q96AY4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
TTC28Q96AY4 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 AL591499.1-201ENST00000307155 1153 ntBASIC14.55□□□□□ -0.08
TTC28Q96AY4 SUGT1-202ENST00000343788 1217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 AF186996.6-201ENST00000485294 149 ntBASIC14.55□□□□□ -0.08
TTC28Q96AY4 AC137579.2-201ENST00000517714 551 ntTSL 4 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 AC004923.4-201ENST00000532296 739 ntTSL 3 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 EML3-212ENST00000494176 2901 ntTSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 SESN3-201ENST00000278499 1710 ntTSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 PDZD9-201ENST00000424898 1260 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 RPL26-209ENST00000584164 873 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 RN7SL202P-201ENST00000584410 262 ntBASIC14.55□□□□□ -0.08
TTC28Q96AY4 AL009176.1-201ENST00000607876 650 ntBASIC14.55□□□□□ -0.08
TTC28Q96AY4 AL590491.2-202ENST00000611126 418 ntTSL 5 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 BX510359.7-201ENST00000619819 630 ntBASIC14.55□□□□□ -0.08
TTC28Q96AY4 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 DBET-201ENST00000630918 3363 ntBASIC14.55□□□□□ -0.08
TTC28Q96AY4 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
TTC28Q96AY4 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.55□□□□□ -0.08
TTC28Q96AY4 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms