Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 AC011498.7-201ENST00000624986 2027 ntBASIC15.03■□□□□ -0
SHROOM3Q8TF72 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 HARS-202ENST00000415192 1401 ntTSL 2 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 AC104306.2-201ENST00000451877 341 ntBASIC15.03■□□□□ -0
SHROOM3Q8TF72 MYADML-201ENST00000474610 2147 ntBASIC15.03■□□□□ -0
SHROOM3Q8TF72 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 CYGB-203ENST00000589145 788 ntTSL 3 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
SHROOM3Q8TF72 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
SHROOM3Q8TF72 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHROOM3Q8TF72 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHROOM3Q8TF72 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHROOM3Q8TF72 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHROOM3Q8TF72 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHROOM3Q8TF72 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHROOM3Q8TF72 AL157407.1-201ENST00000435784 904 ntBASIC15.02■□□□□ -0
SHROOM3Q8TF72 ST13P19-201ENST00000442505 1124 ntBASIC15.02■□□□□ -0
SHROOM3Q8TF72 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
SHROOM3Q8TF72 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC15.02■□□□□ -0
SHROOM3Q8TF72 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHROOM3Q8TF72 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 AC027601.5-201ENST00000624065 2482 ntBASIC15.02■□□□□ -0
SHROOM3Q8TF72 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
SHROOM3Q8TF72 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.02■□□□□ -0
SHROOM3Q8TF72 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
SHROOM3Q8TF72 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 KRT8P28-201ENST00000433288 1390 ntBASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
SHROOM3Q8TF72 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
SHROOM3Q8TF72 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms