Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
USP54Q70EL1 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC18.99■□□□□ 0.63
USP54Q70EL1 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC18.99■□□□□ 0.63
USP54Q70EL1 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USP54Q70EL1 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
USP54Q70EL1 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
USP54Q70EL1 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC18.98■□□□□ 0.63
USP54Q70EL1 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC18.98■□□□□ 0.63
USP54Q70EL1 PSAT1P2-201ENST00000426107 972 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 KRT17P4-201ENST00000429445 819 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 CD81-209ENST00000492627 886 ntTSL 3 BASIC18.98■□□□□ 0.63
USP54Q70EL1 AC093300.1-201ENST00000510368 1201 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC18.98■□□□□ 0.63
USP54Q70EL1 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
USP54Q70EL1 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 AL009176.1-201ENST00000607876 650 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 AL022313.4-201ENST00000562756 2046 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC18.98■□□□□ 0.63
USP54Q70EL1 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
USP54Q70EL1 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
USP54Q70EL1 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 AL109809.1-201ENST00000418979 1367 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 FAM90A21P-201ENST00000510875 1396 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 FAM90A15P-201ENST00000514465 1395 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 FAM90A6P-201ENST00000515148 1394 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 FAM90A16P-201ENST00000526662 1395 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 FAM90A9P-201ENST00000527940 1395 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 FAM90A5P-201ENST00000528738 1395 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 FAM90A14P-201ENST00000530386 1395 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 FAM90A13P-201ENST00000534703 1395 ntBASIC18.98■□□□□ 0.63
USP54Q70EL1 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC18.98■□□□□ 0.63
USP54Q70EL1 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC18.98■□□□□ 0.63
USP54Q70EL1 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC18.98■□□□□ 0.63
USP54Q70EL1 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC18.98■□□□□ 0.63
USP54Q70EL1 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
USP54Q70EL1 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
USP54Q70EL1 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
USP54Q70EL1 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC18.98■□□□□ 0.63
USP54Q70EL1 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC18.98■□□□□ 0.63
USP54Q70EL1 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC18.98■□□□□ 0.63
USP54Q70EL1 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC18.98■□□□□ 0.63
USP54Q70EL1 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
USP54Q70EL1 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
USP54Q70EL1 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
USP54Q70EL1 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
USP54Q70EL1 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC18.97■□□□□ 0.63
USP54Q70EL1 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
USP54Q70EL1 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
USP54Q70EL1 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.97■□□□□ 0.63
USP54Q70EL1 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
USP54Q70EL1 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP54Q70EL1 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC18.97■□□□□ 0.63
USP54Q70EL1 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP54Q70EL1 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP54Q70EL1 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
USP54Q70EL1 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP54Q70EL1 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP54Q70EL1 WDR46-231ENST00000374617 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP54Q70EL1 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
USP54Q70EL1 ABCD1P4-201ENST00000399687 604 ntBASIC18.97■□□□□ 0.63
USP54Q70EL1 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC18.97■□□□□ 0.63
USP54Q70EL1 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC18.97■□□□□ 0.63
USP54Q70EL1 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC18.97■□□□□ 0.63
USP54Q70EL1 DNM1P51-201ENST00000558149 522 ntBASIC18.97■□□□□ 0.63
USP54Q70EL1 AC055811.3-201ENST00000584952 686 ntBASIC18.97■□□□□ 0.63
USP54Q70EL1 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC18.97■□□□□ 0.63
USP54Q70EL1 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP54Q70EL1 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP54Q70EL1 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
USP54Q70EL1 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP54Q70EL1 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
USP54Q70EL1 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC18.97■□□□□ 0.63
USP54Q70EL1 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
USP54Q70EL1 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
USP54Q70EL1 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP54Q70EL1 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
USP54Q70EL1 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC18.96■□□□□ 0.63
USP54Q70EL1 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
USP54Q70EL1 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.96■□□□□ 0.63
USP54Q70EL1 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
USP54Q70EL1 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC18.96■□□□□ 0.63
USP54Q70EL1 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.96■□□□□ 0.63
USP54Q70EL1 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms