Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC16.68■□□□□ 0.26
TPM4P67936 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM4P67936 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
TPM4P67936 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM4P67936 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TPM4P67936 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM4P67936 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.68■□□□□ 0.26
TPM4P67936 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.68■□□□□ 0.26
TPM4P67936 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.68■□□□□ 0.26
TPM4P67936 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TPM4P67936 AL512356.2-201ENST00000546955 174 ntBASIC16.68■□□□□ 0.26
TPM4P67936 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.68■□□□□ 0.26
TPM4P67936 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.68■□□□□ 0.26
TPM4P67936 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
TPM4P67936 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM4P67936 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC16.68■□□□□ 0.26
TPM4P67936 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM4P67936 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TPM4P67936 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM4P67936 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
TPM4P67936 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
TPM4P67936 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
TPM4P67936 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM4P67936 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC16.68■□□□□ 0.26
TPM4P67936 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.68■□□□□ 0.26
TPM4P67936 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
TPM4P67936 TUBB3P1-201ENST00000405796 1332 ntBASIC16.68■□□□□ 0.26
TPM4P67936 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
TPM4P67936 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 AC020910.6-201ENST00000623084 1459 ntBASIC16.67■□□□□ 0.26
TPM4P67936 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM4P67936 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
TPM4P67936 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
TPM4P67936 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
TPM4P67936 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC16.67■□□□□ 0.26
TPM4P67936 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM4P67936 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.67■□□□□ 0.26
TPM4P67936 TMEM198B-204ENST00000484016 896 ntBASIC16.67■□□□□ 0.26
TPM4P67936 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM4P67936 GAPDHP40-201ENST00000505218 1006 ntBASIC16.67■□□□□ 0.26
TPM4P67936 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.67■□□□□ 0.26
TPM4P67936 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM4P67936 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16.67■□□□□ 0.26
TPM4P67936 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 SPDYE12P-201ENST00000618416 771 ntBASIC16.67■□□□□ 0.26
TPM4P67936 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 COL6A4P2-202ENST00000504443 2753 ntBASIC16.67■□□□□ 0.26
TPM4P67936 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
TPM4P67936 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM4P67936 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM4P67936 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
TPM4P67936 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC16.67■□□□□ 0.26
TPM4P67936 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC16.66■□□□□ 0.26
TPM4P67936 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 AL356585.2-201ENST00000625078 2396 ntBASIC16.66■□□□□ 0.26
TPM4P67936 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
TPM4P67936 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TPM4P67936 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC16.66■□□□□ 0.26
TPM4P67936 NUS1P3-201ENST00000423502 862 ntBASIC16.66■□□□□ 0.26
TPM4P67936 AL353779.1-201ENST00000434793 351 ntBASIC16.66■□□□□ 0.26
TPM4P67936 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
TPM4P67936 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.66■□□□□ 0.26
TPM4P67936 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.66■□□□□ 0.26
TPM4P67936 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.66■□□□□ 0.26
TPM4P67936 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 MIR3687-2-201ENST00000577708 61 ntBASIC16.66■□□□□ 0.26
TPM4P67936 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.66■□□□□ 0.26
TPM4P67936 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms