Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CMC4P56277 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CMC4P56277 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CMC4P56277 AC023824.1-201ENST00000562945 2975 ntBASIC11.03□□□□□ -0.64
CMC4P56277 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC11.03□□□□□ -0.64
CMC4P56277 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
CMC4P56277 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC11.03□□□□□ -0.64
CMC4P56277 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CMC4P56277 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
CMC4P56277 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CMC4P56277 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
CMC4P56277 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
CMC4P56277 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC11.03□□□□□ -0.64
CMC4P56277 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC11.03□□□□□ -0.64
CMC4P56277 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC11.02□□□□□ -0.64
CMC4P56277 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.64
CMC4P56277 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
CMC4P56277 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
CMC4P56277 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
CMC4P56277 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.64
CMC4P56277 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
CMC4P56277 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.64
CMC4P56277 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.64
CMC4P56277 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.64
CMC4P56277 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC11.02□□□□□ -0.64
CMC4P56277 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC11.02□□□□□ -0.64
CMC4P56277 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC11.02□□□□□ -0.64
CMC4P56277 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
CMC4P56277 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
CMC4P56277 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC11.02□□□□□ -0.65
CMC4P56277 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC11.02□□□□□ -0.65
CMC4P56277 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC11.02□□□□□ -0.65
CMC4P56277 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC11.02□□□□□ -0.65
CMC4P56277 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC11.02□□□□□ -0.65
CMC4P56277 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
CMC4P56277 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 ANKRD19P-201ENST00000338192 862 ntBASIC11.02□□□□□ -0.65
CMC4P56277 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
CMC4P56277 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC11.02□□□□□ -0.65
CMC4P56277 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC11.02□□□□□ -0.65
CMC4P56277 MTX1P1-201ENST00000440904 838 ntBASIC11.02□□□□□ -0.65
CMC4P56277 APOA2-204ENST00000464492 530 ntTSL 3 BASIC11.02□□□□□ -0.65
CMC4P56277 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC11.02□□□□□ -0.65
CMC4P56277 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC11.02□□□□□ -0.65
CMC4P56277 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC11.02□□□□□ -0.65
CMC4P56277 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC11.02□□□□□ -0.65
CMC4P56277 AC100827.2-201ENST00000563214 1194 ntBASIC11.02□□□□□ -0.65
CMC4P56277 AP006547.1-201ENST00000563435 692 ntBASIC11.02□□□□□ -0.65
CMC4P56277 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC11.02□□□□□ -0.65
CMC4P56277 AL136295.7-201ENST00000619226 1200 ntBASIC11.02□□□□□ -0.65
CMC4P56277 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC11.02□□□□□ -0.65
CMC4P56277 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
CMC4P56277 INF2-202ENST00000330634 7578 ntAPPRIS ALT2 TSL 5 BASIC11.02□□□□□ -0.65
CMC4P56277 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 RNF216-205ENST00000425013 5639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC11.02□□□□□ -0.65
CMC4P56277 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC11.02□□□□□ -0.65
CMC4P56277 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC11.02□□□□□ -0.65
CMC4P56277 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC11.02□□□□□ -0.65
CMC4P56277 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC11.02□□□□□ -0.65
CMC4P56277 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC11.02□□□□□ -0.65
CMC4P56277 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC11.02□□□□□ -0.65
CMC4P56277 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
CMC4P56277 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
CMC4P56277 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC11.01□□□□□ -0.65
CMC4P56277 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CMC4P56277 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CMC4P56277 ANTXR2-203ENST00000403729 8273 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CMC4P56277 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
CMC4P56277 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
CMC4P56277 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC11.01□□□□□ -0.65
CMC4P56277 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC11.01□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms