Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.6□□□□□ -0.07
PKNOX1P55347 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC14.6□□□□□ -0.07
PKNOX1P55347 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.6□□□□□ -0.07
PKNOX1P55347 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC14.6□□□□□ -0.07
PKNOX1P55347 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.6□□□□□ -0.07
PKNOX1P55347 AC114812.1-204ENST00000449669 728 ntBASIC14.6□□□□□ -0.07
PKNOX1P55347 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.6□□□□□ -0.07
PKNOX1P55347 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.6□□□□□ -0.07
PKNOX1P55347 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC14.6□□□□□ -0.07
PKNOX1P55347 AC055876.2-201ENST00000531834 546 ntBASIC14.6□□□□□ -0.07
PKNOX1P55347 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.6□□□□□ -0.07
PKNOX1P55347 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC14.6□□□□□ -0.07
PKNOX1P55347 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.6□□□□□ -0.07
PKNOX1P55347 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.6□□□□□ -0.07
PKNOX1P55347 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.6□□□□□ -0.07
PKNOX1P55347 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.6□□□□□ -0.07
PKNOX1P55347 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.6□□□□□ -0.07
PKNOX1P55347 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.6□□□□□ -0.07
PKNOX1P55347 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
PKNOX1P55347 AC139530.3-201ENST00000620344 690 ntBASIC14.6□□□□□ -0.07
PKNOX1P55347 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.6□□□□□ -0.07
PKNOX1P55347 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.6□□□□□ -0.07
PKNOX1P55347 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC14.6□□□□□ -0.07
PKNOX1P55347 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
PKNOX1P55347 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 PRAME-214ENST00000543184 2758 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.6□□□□□ -0.07
PKNOX1P55347 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
PKNOX1P55347 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
PKNOX1P55347 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
PKNOX1P55347 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 AC005562.1-201ENST00000583030 3219 ntBASIC14.59□□□□□ -0.07
PKNOX1P55347 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC14.59□□□□□ -0.07
PKNOX1P55347 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
PKNOX1P55347 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.59□□□□□ -0.07
PKNOX1P55347 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.59□□□□□ -0.07
PKNOX1P55347 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
PKNOX1P55347 AL442647.2-201ENST00000429864 857 ntBASIC14.59□□□□□ -0.07
PKNOX1P55347 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
PKNOX1P55347 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.59□□□□□ -0.07
PKNOX1P55347 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.59□□□□□ -0.07
PKNOX1P55347 SPDYE22P-201ENST00000582158 798 ntBASIC14.59□□□□□ -0.07
PKNOX1P55347 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC14.59□□□□□ -0.07
PKNOX1P55347 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.59□□□□□ -0.07
PKNOX1P55347 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.59□□□□□ -0.07
PKNOX1P55347 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 GALC-206ENST00000544807 2528 ntTSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
PKNOX1P55347 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
PKNOX1P55347 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
PKNOX1P55347 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
PKNOX1P55347 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
PKNOX1P55347 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms