Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RFX3P48380 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RFX3P48380 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
RFX3P48380 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RFX3P48380 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.02□□□□□ -0.17
RFX3P48380 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RFX3P48380 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
RFX3P48380 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RFX3P48380 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RFX3P48380 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RFX3P48380 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.02□□□□□ -0.17
RFX3P48380 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RFX3P48380 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
RFX3P48380 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
RFX3P48380 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.01□□□□□ -0.17
RFX3P48380 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.01□□□□□ -0.17
RFX3P48380 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
RFX3P48380 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.01□□□□□ -0.17
RFX3P48380 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 AC134312.5-201ENST00000568031 1313 ntBASIC14.01□□□□□ -0.17
RFX3P48380 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
RFX3P48380 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
RFX3P48380 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.01□□□□□ -0.17
RFX3P48380 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.01□□□□□ -0.17
RFX3P48380 RN7SL837P-201ENST00000463010 287 ntBASIC14.01□□□□□ -0.17
RFX3P48380 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
RFX3P48380 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 AC022616.1-201ENST00000518688 554 ntBASIC14.01□□□□□ -0.17
RFX3P48380 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 KSR1-207ENST00000578981 748 ntTSL 4 BASIC14.01□□□□□ -0.17
RFX3P48380 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.01□□□□□ -0.17
RFX3P48380 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.01□□□□□ -0.17
RFX3P48380 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.01□□□□□ -0.17
RFX3P48380 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC14.01□□□□□ -0.17
RFX3P48380 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
RFX3P48380 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14□□□□□ -0.17
RFX3P48380 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14□□□□□ -0.17
RFX3P48380 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14□□□□□ -0.17
RFX3P48380 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
RFX3P48380 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
RFX3P48380 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14□□□□□ -0.17
RFX3P48380 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC14□□□□□ -0.17
RFX3P48380 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14□□□□□ -0.17
RFX3P48380 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14□□□□□ -0.17
RFX3P48380 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14□□□□□ -0.17
RFX3P48380 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14□□□□□ -0.17
RFX3P48380 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14□□□□□ -0.17
RFX3P48380 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14□□□□□ -0.17
RFX3P48380 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
RFX3P48380 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14□□□□□ -0.17
RFX3P48380 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14□□□□□ -0.17
RFX3P48380 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
RFX3P48380 COQ6-210ENST00000554920 649 ntTSL 3 BASIC14□□□□□ -0.17
RFX3P48380 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14□□□□□ -0.17
RFX3P48380 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14□□□□□ -0.17
RFX3P48380 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14□□□□□ -0.17
RFX3P48380 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14□□□□□ -0.17
RFX3P48380 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14□□□□□ -0.17
RFX3P48380 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
RFX3P48380 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms