Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
NEDD4P46934 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
NEDD4P46934 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NEDD4P46934 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC17.33■□□□□ 0.37
NEDD4P46934 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
NEDD4P46934 FAS-202ENST00000352159 1722 ntTSL 5 BASIC17.33■□□□□ 0.37
NEDD4P46934 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NEDD4P46934 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
NEDD4P46934 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
NEDD4P46934 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.37
NEDD4P46934 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC17.33■□□□□ 0.36
NEDD4P46934 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
NEDD4P46934 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
NEDD4P46934 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC17.33■□□□□ 0.36
NEDD4P46934 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.33■□□□□ 0.36
NEDD4P46934 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC17.33■□□□□ 0.36
NEDD4P46934 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
NEDD4P46934 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 AL035414.1-201ENST00000451327 857 ntBASIC17.33■□□□□ 0.36
NEDD4P46934 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.33■□□□□ 0.36
NEDD4P46934 PACS1-203ENST00000524815 628 ntTSL 4 BASIC17.33■□□□□ 0.36
NEDD4P46934 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC17.33■□□□□ 0.36
NEDD4P46934 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
NEDD4P46934 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC17.33■□□□□ 0.36
NEDD4P46934 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
NEDD4P46934 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.33■□□□□ 0.36
NEDD4P46934 RPL35-206ENST00000629845 340 ntTSL 5 BASIC17.33■□□□□ 0.36
NEDD4P46934 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
NEDD4P46934 MBLAC2-202ENST00000514906 1936 ntBASIC17.33■□□□□ 0.36
NEDD4P46934 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC17.33■□□□□ 0.36
NEDD4P46934 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 FER1L4-210ENST00000615531 5998 ntBASIC17.33■□□□□ 0.36
NEDD4P46934 KRT8P29-201ENST00000420409 1371 ntBASIC17.33■□□□□ 0.36
NEDD4P46934 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
NEDD4P46934 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC17.33■□□□□ 0.36
NEDD4P46934 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC17.33■□□□□ 0.36
NEDD4P46934 GRN-222ENST00000639447 1314 ntTSL 2 BASIC17.32■□□□□ 0.36
NEDD4P46934 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 AC009093.10-201ENST00000641956 1442 ntBASIC17.32■□□□□ 0.36
NEDD4P46934 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
NEDD4P46934 AC011498.7-201ENST00000624986 2027 ntBASIC17.32■□□□□ 0.36
NEDD4P46934 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC17.32■□□□□ 0.36
NEDD4P46934 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.32■□□□□ 0.36
NEDD4P46934 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
NEDD4P46934 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC17.32■□□□□ 0.36
NEDD4P46934 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC17.32■□□□□ 0.36
NEDD4P46934 PFN1P12-201ENST00000455938 534 ntBASIC17.32■□□□□ 0.36
NEDD4P46934 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 ATP6V0CP2-201ENST00000469409 207 ntBASIC17.32■□□□□ 0.36
NEDD4P46934 FAM8A2P-201ENST00000528813 1142 ntBASIC17.32■□□□□ 0.36
NEDD4P46934 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.32■□□□□ 0.36
NEDD4P46934 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
NEDD4P46934 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.32■□□□□ 0.36
NEDD4P46934 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
NEDD4P46934 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC17.32■□□□□ 0.36
NEDD4P46934 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
NEDD4P46934 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
NEDD4P46934 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
NEDD4P46934 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
NEDD4P46934 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
NEDD4P46934 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NEDD4P46934 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
NEDD4P46934 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NEDD4P46934 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC17.31■□□□□ 0.36
NEDD4P46934 NORAD-201ENST00000565493 5339 ntBASIC17.31■□□□□ 0.36
NEDD4P46934 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
NEDD4P46934 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms