Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.34■□□□□ 0.05
PTPN9P43378 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN9P43378 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN9P43378 AC100850.1-201ENST00000506768 649 ntBASIC15.34■□□□□ 0.05
PTPN9P43378 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC15.34■□□□□ 0.05
PTPN9P43378 IGHV3-71-201ENST00000523324 359 ntBASIC15.34■□□□□ 0.05
PTPN9P43378 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.34■□□□□ 0.05
PTPN9P43378 AC027237.1-201ENST00000560942 655 ntBASIC15.34■□□□□ 0.05
PTPN9P43378 DUX4L46-201ENST00000566845 751 ntBASIC15.34■□□□□ 0.05
PTPN9P43378 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN9P43378 AC132192.2-201ENST00000596206 1147 ntBASIC15.34■□□□□ 0.05
PTPN9P43378 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.34■□□□□ 0.05
PTPN9P43378 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 GSN-209ENST00000449733 2702 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN9P43378 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC15.34■□□□□ 0.05
PTPN9P43378 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN9P43378 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.34■□□□□ 0.05
PTPN9P43378 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC15.34■□□□□ 0.05
PTPN9P43378 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.33■□□□□ 0.05
PTPN9P43378 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PTPN9P43378 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
PTPN9P43378 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.33■□□□□ 0.05
PTPN9P43378 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.33■□□□□ 0.05
PTPN9P43378 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC15.33■□□□□ 0.05
PTPN9P43378 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
PTPN9P43378 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
PTPN9P43378 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC15.33■□□□□ 0.05
PTPN9P43378 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
PTPN9P43378 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PTPN9P43378 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
PTPN9P43378 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PTPN9P43378 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.05
PTPN9P43378 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.33■□□□□ 0.04
PTPN9P43378 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC15.33■□□□□ 0.04
PTPN9P43378 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
PTPN9P43378 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 OR8S1-201ENST00000310194 1080 ntBASIC15.33■□□□□ 0.04
PTPN9P43378 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
PTPN9P43378 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
PTPN9P43378 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.33■□□□□ 0.04
PTPN9P43378 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.33■□□□□ 0.04
PTPN9P43378 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC15.33■□□□□ 0.04
PTPN9P43378 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.33■□□□□ 0.04
PTPN9P43378 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC15.33■□□□□ 0.04
PTPN9P43378 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC15.33■□□□□ 0.04
PTPN9P43378 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC15.33■□□□□ 0.04
PTPN9P43378 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.33■□□□□ 0.04
PTPN9P43378 MIR4259-201ENST00000584466 101 ntBASIC15.33■□□□□ 0.04
PTPN9P43378 EEF1DP1-201ENST00000585891 896 ntBASIC15.33■□□□□ 0.04
PTPN9P43378 AC239800.4-201ENST00000603712 296 ntBASIC15.33■□□□□ 0.04
PTPN9P43378 AC244157.2-201ENST00000616239 1006 ntBASIC15.33■□□□□ 0.04
PTPN9P43378 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.33■□□□□ 0.04
PTPN9P43378 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
PTPN9P43378 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
PTPN9P43378 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC15.33■□□□□ 0.04
PTPN9P43378 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.33■□□□□ 0.04
PTPN9P43378 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC15.33■□□□□ 0.04
PTPN9P43378 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
PTPN9P43378 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
PTPN9P43378 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN9P43378 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC15.32■□□□□ 0.04
PTPN9P43378 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
PTPN9P43378 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.32■□□□□ 0.04
PTPN9P43378 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
PTPN9P43378 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms