Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.11□□□□□ -0.15
SDC1P18827 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
SDC1P18827 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
SDC1P18827 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 KHSRPP1-201ENST00000427983 1768 ntBASIC14.11□□□□□ -0.15
SDC1P18827 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SDC1P18827 AL365209.1-201ENST00000624418 6473 ntBASIC14.11□□□□□ -0.15
SDC1P18827 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
SDC1P18827 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.11□□□□□ -0.15
SDC1P18827 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
SDC1P18827 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
SDC1P18827 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC14.11□□□□□ -0.15
SDC1P18827 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SDC1P18827 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC14.1□□□□□ -0.15
SDC1P18827 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.1□□□□□ -0.15
SDC1P18827 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SDC1P18827 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SDC1P18827 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
SDC1P18827 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.1□□□□□ -0.15
SDC1P18827 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.1□□□□□ -0.15
SDC1P18827 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
SDC1P18827 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.1□□□□□ -0.15
SDC1P18827 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.1□□□□□ -0.15
SDC1P18827 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SDC1P18827 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.1□□□□□ -0.15
SDC1P18827 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC14.1□□□□□ -0.15
SDC1P18827 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.1□□□□□ -0.15
SDC1P18827 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.1□□□□□ -0.15
SDC1P18827 RN7SL48P-201ENST00000579283 293 ntBASIC14.1□□□□□ -0.15
SDC1P18827 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC14.1□□□□□ -0.15
SDC1P18827 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
SDC1P18827 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.1□□□□□ -0.15
SDC1P18827 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
SDC1P18827 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.1□□□□□ -0.15
SDC1P18827 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
SDC1P18827 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
SDC1P18827 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 FKBP4P6-201ENST00000457486 1332 ntBASIC14.1□□□□□ -0.15
SDC1P18827 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 TCAM1P-207ENST00000485295 1537 ntBASIC14.1□□□□□ -0.15
SDC1P18827 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.1□□□□□ -0.15
SDC1P18827 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SDC1P18827 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC14.1□□□□□ -0.15
SDC1P18827 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDC1P18827 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 KRT8P24-201ENST00000560290 1559 ntBASIC14.09□□□□□ -0.15
SDC1P18827 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC14.09□□□□□ -0.15
SDC1P18827 AL590440.2-201ENST00000641973 1595 ntBASIC14.09□□□□□ -0.15
SDC1P18827 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.09□□□□□ -0.15
SDC1P18827 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
SDC1P18827 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.09□□□□□ -0.15
SDC1P18827 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SDC1P18827 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.09□□□□□ -0.15
SDC1P18827 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.09□□□□□ -0.15
SDC1P18827 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.09□□□□□ -0.15
SDC1P18827 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 ACTG1P3-201ENST00000431775 1114 ntBASIC14.09□□□□□ -0.15
SDC1P18827 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.09□□□□□ -0.15
SDC1P18827 FTLP10-202ENST00000505798 471 ntBASIC14.09□□□□□ -0.15
SDC1P18827 AC068587.3-201ENST00000526613 355 ntBASIC14.09□□□□□ -0.15
SDC1P18827 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
SDC1P18827 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.09□□□□□ -0.15
SDC1P18827 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 PTP4A1P2-201ENST00000546033 454 ntBASIC14.09□□□□□ -0.15
SDC1P18827 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDC1P18827 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.09□□□□□ -0.15
SDC1P18827 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms