Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB1P09429 C2orf69P2-201ENST00000562032 1123 ntBASIC17.45■□□□□ 0.38
HMGB1P09429 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17.45■□□□□ 0.38
HMGB1P09429 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB1P09429 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB1P09429 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 ADK-205ENST00000539909 1866 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB1P09429 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 GOLGA8VP-201ENST00000559009 1798 ntBASIC17.45■□□□□ 0.38
HMGB1P09429 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC17.45■□□□□ 0.38
HMGB1P09429 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC17.45■□□□□ 0.38
HMGB1P09429 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
HMGB1P09429 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HMGB1P09429 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB1P09429 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
HMGB1P09429 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB1P09429 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB1P09429 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB1P09429 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
HMGB1P09429 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB1P09429 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGB1P09429 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
HMGB1P09429 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGB1P09429 PTPA-215ENST00000432124 567 ntTSL 4 BASIC17.44■□□□□ 0.38
HMGB1P09429 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC17.44■□□□□ 0.38
HMGB1P09429 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGB1P09429 AL355994.2-201ENST00000447882 704 ntBASIC17.44■□□□□ 0.38
HMGB1P09429 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGB1P09429 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 SORD2P-201ENST00000558556 1069 ntBASIC17.44■□□□□ 0.38
HMGB1P09429 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGB1P09429 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC17.44■□□□□ 0.38
HMGB1P09429 MIR4683-201ENST00000579659 81 ntBASIC17.44■□□□□ 0.38
HMGB1P09429 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC17.44■□□□□ 0.38
HMGB1P09429 AL162274.1-201ENST00000617191 1098 ntBASIC17.44■□□□□ 0.38
HMGB1P09429 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGB1P09429 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGB1P09429 AC009093.10-201ENST00000641956 1442 ntBASIC17.44■□□□□ 0.38
HMGB1P09429 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
HMGB1P09429 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGB1P09429 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGB1P09429 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
HMGB1P09429 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC17.43■□□□□ 0.38
HMGB1P09429 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
HMGB1P09429 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGB1P09429 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 AC067750.1-201ENST00000608826 6545 ntBASIC17.43■□□□□ 0.38
HMGB1P09429 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 MXI1-205ENST00000393134 889 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
HMGB1P09429 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC17.43■□□□□ 0.38
HMGB1P09429 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 MIR1202-201ENST00000408529 83 ntBASIC17.43■□□□□ 0.38
HMGB1P09429 USB1-202ENST00000423271 1217 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC17.43■□□□□ 0.38
HMGB1P09429 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGB1P09429 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB1P09429 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.43■□□□□ 0.38
HMGB1P09429 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB1P09429 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms